Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01901 ATGAGGAGTTTCCATATGGAGATTTCATCAATCAGAGGGTTACCTGAACTGGGGATAATAGAGGATCCTAACTTTCTCCATCAGTGGCAGTTAAACCCAACTGATACAAGTAGTTTAACAGGAGCTGCTTTTGGTGAGAGTTTGCAGAAGCTCTCATTTTCTGGCAACTCAAACTTCAACCCCAAAGCATCCATGGAAACATCACCAAATGGAAATGAAAGACCAACAAAACAGCTCAGAAACAACAGCTGGAATGGCAAGAAAAGTCAGCATCAGACACCAGAGACACAATATGCTTCATGCTCAAATCTTCTTTCATTTGTTAATTCGAATTACATAAATGAATTGGGACTAGGGAAGCCTAAGGTGGAAATGGCGTGTCCTAAAATTGATAACAGTACCCTTGCAGAGATGTTGATCTCTCAAGGAACCTTGGGAAATCAAAACTATCACTTCAAGGCCAACCAGGAGGCCATAAAGATTGAAACACGTCCAAAACTTTCTCAACCTCAGGACCACATAATAGCTGAAAGGAAGCGGAGAGAGAAACTCAGCCAACGGTTCATTGCTCTATCTGCTCTCGTTCCTGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCAGTGAAGTACTTGAAACAGTTGCAAGAGAAAGTGAGTACTCTTGAGGAGGAACAAAACAGAAAGAGAACTGTGGAATCTGTTGTAACAGTGAAGAAATCTCAGCTATCAGATGATGCTGAAGACTCTTCTAGTTCAGATACCGGTGGTACATTGGAAGAGGCACTACCTGAAATTGAAGCAAGATTTTGCGAAAGAAATGTTCTCATAAGAATACACTGTGAGAAGAAAAAAGGAATCATAGAGAAAACGATCAGCGAAATTGAGAAACTCCATTTAAAAGTTACCAATAGCAGTGCCTTGTCATTTGGGAGTTTCATTCTTGATATAACTATTATTGCTCAGATGGATATGGAATTTTGCATGACAGTGAAGGATCTCGTGAGAAGTTTACGCTCAGCTTTTTCATATTAG 1041 0.4035 MRSFHMEISSIRGLPELGIIEDPNFLHQWQLNPTDTSSLTGAAFGESLQKLSFSGNSNFNPKASMETSPNGNERPTKQLRNNSWNGKKSQHQTPETQYASCSNLLSFVNSNYINELGLGKPKVEMACPKIDNSTLAEMLISQGTLGNQNYHFKANQEAIKIETRPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAVKYLKQLQEKVSTLEEEQNRKRTVESVVTVKKSQLSDDAEDSSSSDTGGTLEEALPEIEARFCERNVLIRIHCEKKKGIIEKTISEIEKLHLKVTNSSALSFGSFILDITIIAQMDMEFCMTVKDLVRSLRSAFSY 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01901 346 CDD bHLH_AtNAI1_like 171 243 - -
Vian6g01901 346 SMART finulus 174 223 IPR011598 GO:0046983
Vian6g01901 346 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Vian6g01901 346 Coils Coil 207 234 - -
Vian6g01901 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Vian6g01901 346 MobiDBLite consensus disorder prediction 55 96 - -
Vian6g01901 346 Gene3D - 167 242 IPR036638 GO:0046983
Vian6g01901 346 PANTHER BHLH TRANSCRIPTION FACTOR 38 344 - -
Vian6g01901 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 234 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01901 Vian-Chr6 36263134 36265194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01901 168 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 61.111 4.58e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian6g01901 HLH 9.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01901 - - gmx:100798018 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01901 6 36263134 36265194 Vian6g01901 6 36263134 36265194 ECH
Vian1g03074 1 51208443 51209970 Vian6g01901 6 36263134 36265194 PCT