Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01886 ATGTATAGTGTTACATTCCATCATCTACAGCTATCAATATTGTTGGAGAGATTTATTTCTAGAATGAGCTTCAAGGAATTATGCAAGGCAACCGATTACTTTTGCATTGATAACGTGTTGGGGATAGGAAAGACAGGGATTATGTACAAGGCAAAGGTATCAAATAGTTGTATTCTGGCAGTTAAGAGACTGTATGATGCTGATAAGTACAAGTGGAAATTCTTACTTGAAATAATGATTCCGAGAAGACACAGGCACAGAAACATAGTTCTACCGCATGGATTCTGCATAGAGAAACATGAAAGGGTTTTGGTGTATGAGTACATCTCTAATGGAAGACTCAGTGATTGGTTACAATCTGACGAGGGACATCAACCAACAAAATTAGAATGGCCCGAGAGGATTCACATTGCACTTGGGATTGCAAGAGGTTTATCTTGGCTCCACAAAAGATGCAACATAGTCCACCTCAATTTAGATTCGGAGTGTGTCTTGCTGGACAAGTACTTTGAGCCAAAAATTTCGAATTTTGGCAAGGCGAAATTCCTAAACCAGACTGTTGAAGATCATGTGAGGATGAAATTCTTTTTGGTTGATAGACTTGGAGTGAAGGGTTATGCTGAGAAGGATGTCTATGATTTTGGAATAGGAAAACGTTTCTTCAACAACAGATTTTTGACAACAATTTGA 690 0.3826 MYSVTFHHLQLSILLERFISRMSFKELCKATDYFCIDNVLGIGKTGIMYKAKVSNSCILAVKRLYDADKYKWKFLLEIMIPRRHRHRNIVLPHGFCIEKHERVLVYEYISNGRLSDWLQSDEGHQPTKLEWPERIHIALGIARGLSWLHKRCNIVHLNLDSECVLLDKYFEPKISNFGKAKFLNQTVEDHVRMKFFLVDRLGVKGYAEKDVYDFGIGKRFFNNRFLTTI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01886 229 ProSiteProfiles Protein kinase domain profile. 34 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01886 229 SUPERFAMILY Protein kinase-like (PK-like) 10 191 IPR011009 -
Vian6g01886 229 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 22 216 - -
Vian6g01886 229 Gene3D Phosphorylase Kinase; domain 1 3 108 - -
Vian6g01886 229 Gene3D Transferase(Phosphotransferase) domain 1 109 207 - -
Vian6g01886 229 Pfam Protein kinase domain 37 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01886 Vian-Chr6 36157749 36158438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01886 19 216 Receptor kinase-like Gene Family AT5G45780 38.647 8.86e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vian6g01886 Pkinase 1.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01886 - - var:108341708 456.832