Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01883 ATGAGTAACAGTGATTGGGTGTTGGATTATGATTATCTAGACAGCATTTCTTTCCCCACTCTACACCCACCCAATTTCTCTTGGTCTTCTTCCTCTCCTCCTCCCACCTTCAGTGCGGACGTAGATGACCCATTGGGAATTTCGGATGGTTTCAAGGAAAACGGGTCAAAGAAACGTCTGAGGTCACCTGGTTCAAAAGCATGTAAAGAGAAAATGAGAAGGGATAGACTCAATGACAGGTTTTTGGAACTGGGGTCTGTCCTGGACCCTGCAAGGCCTCTCAAAATGGAAAAGGCTGTTATATTAAGTGATGCAGTTCGAACGGTGTCTCAGTTACGAGAGGAAGCTCAGAAGCTACGAGAGTCCATTAAGAATCTACAAGGGAAAATCAATGAACTGAAGGCTGAGAAGAATGAGCTTCGTGAGGAGAAGCAGCAACTAAAAGCAGAAAAAGATAACCTTGAGCAGAAGATTGAGGCCTTTAAGTTACAACCTAGCTTTCTTTCTGCAGTTCCTGCACCAGGACAAGTTGTTGGTAGAAAGTTGGTGCCCTTCATGGGCTACCCAGGAGTTGCCATGTGGCAGTTTTTACCACCTGCTGCTGTTGACACCTCACAGGACCATGTACTCCGGCCACCGGTTGCATAA 648 0.4614 MSNSDWVLDYDYLDSISFPTLHPPNFSWSSSSPPPTFSADVDDPLGISDGFKENGSKKRLRSPGSKACKEKMRRDRLNDRFLELGSVLDPARPLKMEKAVILSDAVRTVSQLREEAQKLRESIKNLQGKINELKAEKNELREEKQQLKAEKDNLEQKIEAFKLQPSFLSAVPAPGQVVGRKLVPFMGYPGVAMWQFLPPAAVDTSQDHVLRPPVA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01883 215 MobiDBLite consensus disorder prediction 24 69 - -
Vian6g01883 215 MobiDBLite consensus disorder prediction 52 69 - -
Vian6g01883 215 Pfam Helix-loop-helix DNA-binding domain 65 112 IPR011598 GO:0046983
Vian6g01883 215 Gene3D - 65 137 IPR036638 GO:0046983
Vian6g01883 215 SMART finulus 67 118 IPR011598 GO:0046983
Vian6g01883 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 139 IPR036638 GO:0046983
Vian6g01883 215 CDD bHLH_AtILR3_like 66 141 - -
Vian6g01883 215 Coils Coil 102 164 - -
Vian6g01883 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Vian6g01883 215 PANTHER BHLH TRANSCRIPTION FACTOR 4 215 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01883 Vian-Chr6 36134493 36136595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01883 3 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 55.652 3.68e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian6g01883 HLH 5.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01883 - - ccaj:109814067 333.954