Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01881 ATGGCGCAGAAGCAGAAGCGTCCTTCCCCTCTGGATGAGCCACCCACGGCTTCTTCTTCAGATTCCGAGGAAGAAGAAACGCAAAAACCATCTTCTCTGCGGCATGGAAACGAAGAGGAAGAAGCTTCGTCGGGAGAAGATGAAGAATCCTCTGGAGAAGAGGCAGAAGATGACGATCTTCCACCACCCATCACCAAAACCAACCCTCCACCCGCTCCCACGAAGCCTCATCCCGAATCCGCATCTTCTGATTCCGAAACAGAATCCGAATCAGAGACCGAGTCGGAAACTGAATCCACTCCTGCGAAGGCGGTAAAGCCTCTCGCGACAAAGCCCATGGACCAGGCCCAAAAGCCCAAGGTCCTACCTTCTCCGGCGCCACCCAAACCGGCTGTGAAACGCCCCGCCGATAACAGCAACGCCCACGTCGCGAAGAAAAAGAAGAAATCCGGCGATTCTTCTTCTTCCCCTGCCGCTTCCGACGAAGAGATGGAGGAAGGGAAGAAGTCCGGCGATCAAATGAAGAAGTTTCAGAGGCTGTGGAGCGAGGAGGACGAACTCGCCATTCTCAAGGGCTTGGCTGAGTTCACCTCCAAAACAGGGAACGATCCTCTTAAGTTTGCGGGTGGCAATGCTTTCCATGATTTCTTGAAGAAGTCGCTGCATGTGGAAGTTACCAGCAACCAGCTGAAGGAGAAGGCTCGGAGACTAAAGAAGAAGTATGAGATCGCTGCAGTGAGAGAGAATAGCGCTGATGGCCTTATATTTGCAAAGCCGCACGATCAGAAAACGTTTGAATTGTCGAAAAAGGTTTGGGGAAGTGAGCAAGATGGTGGAGTGGCCAATGGGGCAGTGGAAAAGCCCAAGGCTAACGGGAATGCTGCTAAGAGTCCGAAGAAGAAGGAAACCGGTAGCAGGAATGTGGCTTCTGCCAAGAAAACTAAACCTGAACCGAAACAGGAGACGGTGCCAGCGACGCGCATGGAGTTCAAGGAATCTGAAAAGATGCATATCGATCAAAAGACTGTTAATTGTGAAGTGAGTATGTTTTTGCATGCATTGTCCCACTTTAAAGAGGGTCTGGGTGTTTGTGGGTTGGACGAGGAGGATGTGAAGAAGGGGTTGGAATTGATTGGTGAATCGAAGAGGACAGAGTTGAGGGCAAAGTGGAAGAAATTACAACGTACTGAATTGGAACTTTTTGCTAATCGCTCAGAACTGATTGGGGAGCAAACTAAATTGATAGTTGAGGCACTTCGGTCGTCCAACCATTAG 1275 0.5035 MAQKQKRPSPLDEPPTASSSDSEEEETQKPSSLRHGNEEEEASSGEDEESSGEEAEDDDLPPPITKTNPPPAPTKPHPESASSDSETESESETESETESTPAKAVKPLATKPMDQAQKPKVLPSPAPPKPAVKRPADNSNAHVAKKKKKSGDSSSSPAASDEEMEEGKKSGDQMKKFQRLWSEEDELAILKGLAEFTSKTGNDPLKFAGGNAFHDFLKKSLHVEVTSNQLKEKARRLKKKYEIAAVRENSADGLIFAKPHDQKTFELSKKVWGSEQDGGVANGAVEKPKANGNAAKSPKKKETGSRNVASAKKTKPEPKQETVPATRMEFKESEKMHIDQKTVNCEVSMFLHALSHFKEGLGVCGLDEEDVKKGLELIGESKRTELRAKWKKLQRTELELFANRSELIGEQTKLIVEALRSSNH 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01881 424 Pfam Protein of unknown function, DUF573 177 273 IPR007592 GO:0006355
Vian6g01881 424 MobiDBLite consensus disorder prediction 63 77 - -
Vian6g01881 424 MobiDBLite consensus disorder prediction 1 177 - -
Vian6g01881 424 PANTHER BNAANNG10740D PROTEIN-RELATED 68 418 IPR007592 GO:0006355
Vian6g01881 424 MobiDBLite consensus disorder prediction 293 325 - -
Vian6g01881 424 MobiDBLite consensus disorder prediction 42 58 - -
Vian6g01881 424 MobiDBLite consensus disorder prediction 22 41 - -
Vian6g01881 424 MobiDBLite consensus disorder prediction 276 325 - -
Vian6g01881 424 MobiDBLite consensus disorder prediction 161 177 - -
Vian6g01881 424 Coils Coil 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01881 Vian-Chr6 36126459 36127733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01881 6 418 GeBP Transcription Factor Family AT1G61730 30.679 7.05e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vian6g01881 DUF573 1.5e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01881 - - gmx:100791520 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01881 6 36126459 36127733 Vian6g01881 6 36126459 36127733 ECH