Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01878 ATGTTTGAGGCTTGGCTTTCTCTCAAGAAGACCCTTCAGTGCAAGCCACACCCAAATCATGTTCATGATCCAAACACTATTAGGCAGCAAAAAGGTAATCAGAGAACAAAGTTGGGCAATCTTGAGAATTCAAATACCAAAGATTTCATCCATGGAAGCAACAGGCACTCTAAAAATCCCCTGAGTTTTAAAGGAGACATTGAGATCACTGGTCCTATAATCGACGAAATCACTCTTGATAGCTCAAACCATGAAACTAGTCGACGTTTTCCTTGTCCTCAAAGCAATAGCAGCAATAAAACTTCTCGCAGAACACGAAGGTCAGATACATATTCGAGGATAGCATATCCTCTAGATCAGAATGAAGCAAATGTGTTCTCCAATACAAGGACTTTGGTTCGGATGGATTCTGATGTCTTTTCATCATTGACATGTGATAAATGTGGCGAGAAATTAAAAAACCCTGTTGCTGTAGAAGCACACAATATCTCCGATCATTCAGTGATTGAACTTGAGGAAGATTCCTCGAGACAGATCATAGAAACAATATGTGGAACAAGCTCGGTTTACTCTGAAAGCATGTTGGGTGAGATTGACTGCATCTTAAAGGTTGTGAATATACCAAAAACCTTTGCTTGCTTTGAAGAGTATAGAGAAAAGGTGAAGGAAAAGGCTGACAGACAAAAGAAAAAACACCCTCGTTGTGTGGCTGATGGAAACGAACTTTTAAGGTTCCACGGCACAACAATTGCATGCTCTCTGGGCATAAACAGCTGTTATAGGCTGTGCACTTTAGACTATTGTGGTATATGTCAAATTCTGAGACATGGGTTTTCGACCAACAAGGAATTCAAAGGTGCATTGGGGGTTTACACAACTTCCACGAGTGGGAAAGCCTTTGAATCCATTTCCATAATGACATCCCATGAGAGACCATTTTCGAGAAAGTCCATCATAGTGTGCAGAGTAATAGCTGGGAGAATTTGTAGCCCTCTTGAAGGAATTGAAGAAAGGGGTGATTCATTGGCAGAAAAGATAAATGGGCATTCAGATGTTGAGGAACTGTATGTGTTAAATCCCAGAGCCCTTCTTCCTTGCTTTGTAGTAATCTACAAACAGCAAACAGCCAAGTTTAGAAGGGTCGGCCCAAGCTTAAGGATAGGTAGCTTTTAA 1173 0.4084 MFEAWLSLKKTLQCKPHPNHVHDPNTIRQQKGNQRTKLGNLENSNTKDFIHGSNRHSKNPLSFKGDIEITGPIIDEITLDSSNHETSRRFPCPQSNSSNKTSRRTRRSDTYSRIAYPLDQNEANVFSNTRTLVRMDSDVFSSLTCDKCGEKLKNPVAVEAHNISDHSVIELEEDSSRQIIETICGTSSVYSESMLGEIDCILKVVNIPKTFACFEEYREKVKEKADRQKKKHPRCVADGNELLRFHGTTIACSLGINSCYRLCTLDYCGICQILRHGFSTNKEFKGALGVYTTSTSGKAFESISIMTSHERPFSRKSIIVCRVIAGRICSPLEGIEERGDSLAEKINGHSDVEELYVLNPRALLPCFVVIYKQQTAKFRRVGPSLRIGSF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01878 390 Gene3D - 165 377 - -
Vian6g01878 390 MobiDBLite consensus disorder prediction 82 109 - -
Vian6g01878 390 MobiDBLite consensus disorder prediction 23 48 - -
Vian6g01878 390 ProSitePatterns Zinc finger C2H2 type domain signature. 145 166 IPR013087 -
Vian6g01878 390 SUPERFAMILY ADP-ribosylation 233 374 - -
Vian6g01878 390 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 5 371 - -
Vian6g01878 390 MobiDBLite consensus disorder prediction 16 64 - -
Vian6g01878 390 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01878 Vian-Chr6 36116989 36118454 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01878 4 372 C2H2 Transcription Factor Family AT5G54630 41.203 9.68e-93 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01878 - - gmx:100807216 553.132