Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01871 ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTAATTCGACAAGAAGTGTGTTCCCTCTTATCTCATCAACATGTTCCGTGGCAGCAGCTGATGCAGGAAACTACAGCACTTGGCAAAGCACTGATTTCGTGGATTTGAAGGGAACGAGGTCTTGCGCTGAGGACATTAATAACTTTATATCTTCTGATAATTCTCTGAGTTTTCTTGATGTTGAGAAGCCCCAGCTGAGGGACTCGGCTGGTGGAACTGGAAGCATCCTCACCGATTCCACCTTACAAATGATAGGTTTTGGCATGTCATCTTCAGCTTCATCGAATTGGAATCAATCTTTATTAGGGAGCGATTTTCATTCTGTGCTTCAAGGAGAAACAGGCATGGATGGCGATCTACCAAAGAATTTCTCATCTGCTGGTGGCCAAGGTTCCACCGTTGATGCTTTCAAGTCAATGAACCAAGAATTTTCCTTAGATCAGCAAAGCCTGAATTCCGTTGTTACGAGCACCGGATCATTATCTGGTGGTTTTCCAGTTGTTTCAGCCTCCTATGGTTACCCTTCAACCTTGATACAAGGCTTATACGACCCTGAGCCTCAACCACAGCCACAGAACTCACTTTTCACCAACCCCCCCATGTCCTATTCTTCATCTACCGCAAACTATGGGACATGTTCCAATGAACTGTCGCCAACTTGGTCCAAAATCTCTTCACTTCTCAAGCCCTCAACGCCAAAACAGCAGCTCAGTGGACTGCACTTTTCCAACGACACTTCTTTCTGGAATGGTTCCGCCGAAGCACTTCATGACATAAGAGCAGGTGTTTTTGCTTCCTCACAGGCGCAATATCAAACGCCAAAATTTGAAGAGAAATCCAACAGCTCCAATACTCGATTAAACAAGCTCAAGAGAGAAGAATCGCCAGACGCAATCTCATCTGCGAAGAAAAATTCTTCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTAAGGAAGGAAAAGCTAGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGATTGTGATAATCTGAAGGAGTCAGAAGGGCGAAAAGAAGATCTGAGAAGCCGAGGGCTTTGTTTAGTACCGATTTCGAGCACGTTCCCGGTGGCTAACGAGAGCAGTGTTGATTTCTGGACGCCAACATTCGGAGGTGCAGTGATTGGCAGGTAG 1308 0.4557 MAEEFQAAICGESWWNINSTRSVFPLISSTCSVAAADAGNYSTWQSTDFVDLKGTRSCAEDINNFISSDNSLSFLDVEKPQLRDSAGGTGSILTDSTLQMIGFGMSSSASSNWNQSLLGSDFHSVLQGETGMDGDLPKNFSSAGGQGSTVDAFKSMNQEFSLDQQSLNSVVTSTGSLSGGFPVVSASYGYPSTLIQGLYDPEPQPQPQNSLFTNPPMSYSSSTANYGTCSNELSPTWSKISSLLKPSTPKQQLSGLHFSNDTSFWNGSAEALHDIRAGVFASSQAQYQTPKFEEKSNSSNTRLNKLKREESPDAISSAKKNSSEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQDCDNLKESEGRKEDLRSRGLCLVPISSTFPVANESSVDFWTPTFGGAVIGR 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01871 435 MobiDBLite consensus disorder prediction 298 315 - -
Vian6g01871 435 CDD bHLH_AtbHLH_like 338 384 IPR045239 -
Vian6g01871 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 384 IPR036638 GO:0046983
Vian6g01871 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 381 IPR011598 GO:0046983
Vian6g01871 435 Gene3D - 342 403 IPR036638 GO:0046983
Vian6g01871 435 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 169 414 - -
Vian6g01871 435 MobiDBLite consensus disorder prediction 287 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01871 Vian-Chr6 36044202 36046700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01871 1 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 36.266 1.79e-60 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01871 - - gmx:100805087 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03111 1 51768192 51771529 Vian6g01871 6 36044202 36046700 PCT