Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01858 ATGAGGAAGTGTGATCTCTGTAACAGTCCTGCAAAGTTGTCGTGTGAATCGGATCAAGCCAGCCTCTGTTGGAAATGCGATGCCAAGGTTCACAGTGCAAACTTCCTCGTCACCAAACATCTCAGGATTCTTCTCTGCCATGTTTGTCAGTCGCTCACGGCTTGGCACGGAACTGGACCCAAGTTTGTACCCACCGTCTCCGTTTGCAACACTTGTGTTAACAACAACAGTGAGAGCCGCAGCCGACAGAATCACGATGAAGATGATGACGACCATAATGATGATGATGATGATGATGAGATGGATGACCATGTAGAAAACGATGAGGATGGAGCGGAAGAAGATGATGAAGAAAATCAAGTGGTTCCATGGACATCTACACCACCACCACCCCCAGCTTCCGCTTCTTCAAATAGTGCTGCAACTAGTTCTACCAGGTCCTCTAACGTTGAAGAGGGGGTCTCAGATTAA 471 0.4777 MRKCDLCNSPAKLSCESDQASLCWKCDAKVHSANFLVTKHLRILLCHVCQSLTAWHGTGPKFVPTVSVCNTCVNNNSESRSRQNHDEDDDDHNDDDDDDEMDDHVENDEDGAEEDDEENQVVPWTSTPPPPPASASSNSAATSSTRSSNVEEGVSD 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01858 156 MobiDBLite consensus disorder prediction 136 156 - -
Vian6g01858 156 MobiDBLite consensus disorder prediction 89 120 - -
Vian6g01858 156 CDD Bbox1_BBX-like 3 45 - -
Vian6g01858 156 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 146 - -
Vian6g01858 156 Pfam B-box zinc finger 2 41 IPR000315 GO:0008270
Vian6g01858 156 MobiDBLite consensus disorder prediction 75 156 - -
Vian6g01858 156 SMART bboxneu5 1 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01858 Vian-Chr6 35949570 35950040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01858 2 133 C2C2-CO-like Transcription Factor Family AT4G27310 39.877 2.11e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian6g01858 zf-B_box 6.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01858 - - vum:124826682 221.476