Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01850 ATGGGGAAAAAATCGACGCCGGAAGAGGAAGGAAAAGCGGTACCGGAGCATCTGCGGTGCAACCGGACGGACGGGCGGCAATGGCGGTGCCGGCGGAGAGTGATGGAAAACCTAAAGCTCTGCGAGATTCACTACCTGCAAGGTCAGCATCGGCAGCACAAGGAAAAGGTTCCGGAGTCTCTGAAGCTTCAGAGAAAGAGCCAAAACGACGCCGTTGAGACTCATATTGGGGCGAAGCGGAAGGGCAACTCGAGAGAGGCATTTGTCAATAGGAGGAACCAATTGGAGCTCATAAGGATGGTTCTGCAGAGAGAGGCTGAGAAGAAGAAAAAGAAGGAATCGCAATTGAATTTGCCTTTGAATTTGAATTTGCACTCCAATCACGACTTGAGGAGGGAGTTGCCGAATGGGGTTATGGCTATTGCTTCCGCTTCAAGGCCCAATGTGGCTTCTTCTTCTCGTTACTTCAGGTCCAAGAATGTTGAGAGGGGTTCTGGTGGCAAATTGCAGTGTGGACGAAATTTGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGCAGTCTTATAAGCTTCATTGTTGTCCTTGCCTATGAGATGCGCCTCTATAGCACTATGGCATTGCGTTTTGTAAAGGGAGGTCCGCGACGGCGGCATTCTAGACTGCAATGGCTTGTTTATATGGTGGAATTTCGGCGTTCTGCCATAACCACCAATCAGTTCTACTACACCAGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGCCGAGGAACTTGCACCTGTAAAGATTGCTTGGCACCTCAATATGAAGACAGTGAAAGTAAGGAGCATTTAGCTGGTAGAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTACTGAAACAAATAAAAGAAGATCACCACGTGGGTGTAGAAACAAAAGCGAAAATTAAAGGGAAGAAAATGAATGATATTATCATCAAACCAGTCAAGTTTGGCTGCAATGAGAAAAATTACTGTTGTTCTCGCGCATTAAGTCAAAGAAGAATCTCTGAACAAAACAACTCTTCCATATCCAAGCAACCTGACAGGATAAGTGCTTGCACTTCTGGCAAAAGGTACCTATTGGATGAGAAGGCCATTTCTCATGGCAATTTAACTGATACCTCAATGTTAACTGAGTGGACAAGTTGTAACGGTGCTTCCATAGTATCATGCCCAACTACAAAGCTTGGTGATTGTGGTAATAGCCACCTTGATCTAAACTACGTTTTTCCCTTAAGTTGGATCAAAGAAATGGAAGCAAAGGCAGAAGAAATAATTTGCAGCTATGACTTTCCTGAAACTCTGGATAAAAGTTCAAGTTGCCCAATGTGTGTCGACAAAGATCATAAAACTAGCAGATACAAACAGCTACCGGAAGCAGCTCAAAGGGAAGATTCTAATGATAATTACTTATTTTATCCTACAGTTTTGGACATCGGTGGCAATCATTTTGAACACTTTCAGAAACATTGGGGAAGAGGCCATCCTGTAGTAGTGAGAGATGTGCTGCAAAGTACACCAAACCTTAGTTGGGATCCACTGTTCATGTTTTGCACCTATCTTGAGAGGAGCATGACAAGATATGAGAATAACAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGACTAACGTTAGGCAGTATTTTACCGGATCTCTTAAATGTCAACCAAAGAAAAATACTTGGCATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCCGAAGTAATCGATGCACTTCCAATTCAAGAATACATGAATCCCTCGTCAGGTCTTTTGAATTTAGCTGCAAATTTGCCACAGGGGAGTACAATGCACGACATAGGACCATATGTTTATATTTCATATGGCTGTGCTGATGATGAAGCCGAGTCCGTGACAAATCTCTGTTATGACTCATATGACATGGTTAACGTTATGGCACATTCCATGGACATCCCTCTGTCCACTGATCAGCTATCTAGAATAAGCAAGTTATTGAAAAAGCACAAAGTTCTATGTCAAAAGGTGTCATCTAAAACTACTACTGAGCACGCAGAAGACAGGGAACAAAATGAAATGCAAAGTTTGGTAAGAGAAGGAACTGATTTTTTAAGGAGAGTCAACAGAACATCTTGCATCTCTTGTGAAGCGAAAACAATATGCAATCAGAATTTAGACAACAATATTTCCGGTGATAAAGAATGTGGTTCCTATTCTGAAACTGAAAAGGCACATCGCTCTTTATCTTTCCACAGCATAGTTCTAAGTTCTGAGATGTTTCCAGATCATAATCCTAGAAATTCCGTTGAAAACTCAGACAATGATAAAAGGAAGAAGGCTACAGGGAATGCTGGTGCTCAATGGGATGTCTTTCGAAGACAAGACGTGCCAAAGCTCTTAGAATACCTTAAAATACACTCTGATGAATTTTCTTATACTAGTGAACATCACGAGAAGATGGTTCATCCACTTCTAGATCAGAGCTTCTTTCTTGACAATACTCACAAGATGAGACTTAAGGAGGAATTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCGTGTGGAGTTGGAATTTGTGTCCCCTGAGAATGTTGCTGAGTGTATCCAATTGATTGATGAGGCCCGGCTGCTTCCAGAAGACCACCCCGCAAAAGTAGAAAAACTGGAGGTAGTCTTTGTAATAATACTTTTATTTAGCAATTTAGCCTTTGTCCTGTTAGATGTTTGCCCTGAATTCACAAGGCCTGTTTCTGTTTTGGGTTTATGA 2940 0.4194 MGKKSTPEEEGKAVPEHLRCNRTDGRQWRCRRRVMENLKLCEIHYLQGQHRQHKEKVPESLKLQRKSQNDAVETHIGAKRKGNSREAFVNRRNQLELIRMVLQREAEKKKKKESQLNLPLNLNLHSNHDLRRELPNGVMAIASASRPNVASSSRYFRSKNVERGSGGKLQCGRNLKKGRRKKCHWCQRSDSCSLISFIVVLAYEMRLYSTMALRFVKGGPRRRHSRLQWLVYMVEFRRSAITTNQFYYTRYFDTQNEVKMACPVCRGTCTCKDCLAPQYEDSESKEHLAGRNRVDRILHFHYLVCMLLPVLKQIKEDHHVGVETKAKIKGKKMNDIIIKPVKFGCNEKNYCCSRALSQRRISEQNNSSISKQPDRISACTSGKRYLLDEKAISHGNLTDTSMLTEWTSCNGASIVSCPTTKLGDCGNSHLDLNYVFPLSWIKEMEAKAEEIICSYDFPETLDKSSSCPMCVDKDHKTSRYKQLPEAAQREDSNDNYLFYPTVLDIGGNHFEHFQKHWGRGHPVVVRDVLQSTPNLSWDPLFMFCTYLERSMTRYENNKDLLEACLDWFEVETNVRQYFTGSLKCQPKKNTWHEMLKLKGWLSSQLFKEQFPAHFAEVIDALPIQEYMNPSSGLLNLAANLPQGSTMHDIGPYVYISYGCADDEAESVTNLCYDSYDMVNVMAHSMDIPLSTDQLSRISKLLKKHKVLCQKVSSKTTTEHAEDREQNEMQSLVREGTDFLRRVNRTSCISCEAKTICNQNLDNNISGDKECGSYSETEKAHRSLSFHSIVLSSEMFPDHNPRNSVENSDNDKRKKATGNAGAQWDVFRRQDVPKLLEYLKIHSDEFSYTSEHHEKMVHPLLDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVRVELEFVSPENVAECIQLIDEARLLPEDHPAKVEKLEVVFVIILLFSNLAFVLLDVCPEFTRPVSVLGL 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01850 979 MobiDBLite consensus disorder prediction 794 818 - -
Vian6g01850 979 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 953 IPR045109 GO:0032454|GO:0033169
Vian6g01850 979 SMART cupin_9 610 933 IPR003347 -
Vian6g01850 979 Gene3D Cupin 504 941 - -
Vian6g01850 979 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Vian6g01850 979 MobiDBLite consensus disorder prediction 803 817 - -
Vian6g01850 979 Coils Coil 92 112 - -
Vian6g01850 979 Pfam WRC 15 56 IPR014977 -
Vian6g01850 979 ProSiteProfiles JmjC domain profile. 629 933 IPR003347 -
Vian6g01850 979 Pfam JmjC domain, hydroxylase 820 916 IPR003347 -
Vian6g01850 979 SUPERFAMILY Clavaminate synthase-like 509 937 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01850 Vian-Chr6 35899588 35905345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01850 11 54 GRF Transcription Factor Family AT2G22840 47.727 8.80e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian6g01850 JmjC 2.9e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01850 K15601 - gmx:100799234 1458.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03125 1 52051796 52057615 Vian6g01850 6 35899588 35905345 PCT