Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01848 ATGGGGAGATCACCTTGTTGCGAAAAGAATGGCCTCAAGAAAGGACCATGGACCACTGAGGAGGATCAGAAACTCCTTGATTACATTCAGAAACATGGATATGGCAACTGGAGGACACTCCCAAAGAATGCTGTTTCAACTGACGAGTGGTCTGCAATTGCTTCTCGCTTACCCGGAAGAACAGACAATGAAATCAAGAACTATTGGAACACACACATTAGAAAAAGGCTTCTGAGGATGGGAATCGACCCTGTCACACACAGTCCTCGACTTGATCTATTGGACATCTCTTCCATTCTAAACGCATCTTTCTATGGTTCATCACAAATGCTCCTTGGCATGCAGCCTTCTATGGTGAACCCCGAGCTTTTAAGGTTGGCTTCTTCACTCTTCTCCTCCTCACAGCAACACAAACACCTTGAAATCTGTGCTCCAAAGGGTCAACAGAACCAGCTTTGCGATCCACAGGTTCAGAATCATGTTCCACACTTGGCACAATTTCAAGATCCAGTTCAAGAGGTGCCTGCATGCAGCACCCCCGTGTTCGGCACCCCTCGTGTTTCATTGCCTCTCTCTCAACCACAGTTGGTTGAGCCCCATAATGTGGACCCGTATCCATCATCAAGTTTCACAGACTTCACTTACCAACAACATTCCCATGATGATCAGATAATAAGTGATTGGCACAAAGATGGGGTTGCTTTAAGCACTTTAACAGATGACTATGTCCCTCAGTTATCAGGCTATAATTATTATAGTTCTGATGCTCAAGATCTCGTGTATCCTCCCTTGTCCGAACCTTCAACTTTCCATTCCAATAACAGCAATCAGAACTTCAGCTTCGCTTCAGTTCTATCCACGCCTTCGTCAAGCCCCACACCCTTGAACTCAAACTCCACGATAATCAACGGGAGCAACACAGAAGACGAGAGAGACCAGAGCTATGACAGTAGCAGCATGTTGAAATTTGAAATCCCAGATATTTTAGATGTGAATGAGTTCATGTAA 1008 0.4504 MGRSPCCEKNGLKKGPWTTEEDQKLLDYIQKHGYGNWRTLPKNAVSTDEWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDISSILNASFYGSSQMLLGMQPSMVNPELLRLASSLFSSSQQHKHLEICAPKGQQNQLCDPQVQNHVPHLAQFQDPVQEVPACSTPVFGTPRVSLPLSQPQLVEPHNVDPYPSSSFTDFTYQQHSHDDQIISDWHKDGVALSTLTDDYVPQLSGYNYYSSDAQDLVYPPLSEPSTFHSNNSNQNFSFASVLSTPSSSPTPLNSNSTIINGSNTEDERDQSYDSSSMLKFEIPDILDVNEFM 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01848 335 Gene3D - 11 79 - -
Vian6g01848 335 Pfam Myb-like DNA-binding domain 14 72 IPR001005 -
Vian6g01848 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 77 IPR017930 -
Vian6g01848 335 SUPERFAMILY Homeodomain-like 9 83 IPR009057 -
Vian6g01848 335 CDD SANT 16 73 IPR001005 -
Vian6g01848 335 MobiDBLite consensus disorder prediction 283 317 - -
Vian6g01848 335 SMART sant 13 75 IPR001005 -
Vian6g01848 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 48 217 - -
Vian6g01848 335 ProSiteProfiles Myb-like domain profile. 9 73 IPR001005 -
Vian6g01848 335 MobiDBLite consensus disorder prediction 283 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01848 Vian-Chr6 35883553 35884893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01848 1 335 MYB Transcription Factor Family AT4G21440 40.665 1.16e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian6g01848 Myb_DNA-binding 5.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01848 K09422 - gmx:778071 496.508