Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01844 ATGCGGATTCTGAAAAAGGTGGATGTACAATTCAGTGAAGCCGAATGTTTCAAGATTGATGCAGAAAATAAGAAAATTTACTGTCGATCAAGTTTGAACAATAATTTGAATGGAAAAGAAGAATTCGTGGTGGATTATGACTACTTGATAATCGGCGTGGGCGCTAATGTAAACACATTCAATACTCCAGGAGTTATGGAGAATTGCCATTTTTTGAAGGAAGTTGAAGATGCTCAAAAGATTAGAAGAACAGTTATTGACTGCTTCGAGAGAGCAAATTTGCCCGATGTAAGTGAAGATGAGAAGAAGAGAATTCTGCATTTTGCTATTGTTGGAGGTGGACCAACTGGAGTGGAGTTTGCAGCCTCACTTCATGATTTTGTCAATGAGGATTTGGTCCGTTTATATCCCGGGATAAAAGATTTGGTTAAAATTACTCTTCTGGAGGCGGCAGATCATATTTTGGGCATGTTTGACAAGAGAATCACTGCTTTTGCTGAAGACAAGTTTCGAAGAGATGGGATTGATGTGAAAACAGGATCCATGGTTGTTAAGGTATCTGAGAAAGAAATTTCCACCAAAGAACTGAAAAGTGGAGGAGAGATTAAAACAATACCGTATGGAATGGCTGTCTGGTCAACTGGTATCGGTACTCGTCCATTTATTAAAGATTTTATGACTCAAATCGGCCAGGCTAGTAGGCGTGCTCTAGCTACCGACGAATGGTTGAGAGTTGAAGGGTGCAACAATGTCTATGCGCTCGGTGATTGTGCTACGATAAACCAGCGAAAAGTCATGGATGATATTACGGCGATCTTTAAGAAGGCTGACAAAGACAATTCAGGAACACTGACGGTTAAAGAATTTCAAGAGGCCATGAAAGACATCAGTGAAAGATACCCTCAGGTTGAGCTATATCTGAAGAATAAACAGATGCGCAACATTGCTGATTTATTGAAGGATGTCAAGGGGGATGATAAAAAGGAATCAATTGAATTGAATATCGAAGAACTTACAACAGCACTTTCCAAAGTGGATTCTCAAATGAAATTTCTTCCTGCTACAGCCCAGGTTGCATCTCAGCAAGGCACTTACCTAGCCACATGTTTTGACCGCATGGAAGAATGTGAAAAAAGTCCAGAAGGTCCTCTCAGGTTCAGGGGAGAAGGTCGCCATCGGTTCAAACCCTTTAGGTACAAGCATTTGGGTCAATTCGCTCCTTTGGGAGGAGAGAAGACAGCAGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGTCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGCACAAAAGCATTGGTAGTTTCAGACTGGACAAGACGTTTTATTTTTGGAAGGGACTCAAGTAGCATATGA 1401 0.4147 MRILKKVDVQFSEAECFKIDAENKKIYCRSSLNNNLNGKEEFVVDYDYLIIGVGANVNTFNTPGVMENCHFLKEVEDAQKIRRTVIDCFERANLPDVSEDEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVRLYPGIKDLVKITLLEAADHILGMFDKRITAFAEDKFRRDGIDVKTGSMVVKVSEKEISTKELKSGGEIKTIPYGMAVWSTGIGTRPFIKDFMTQIGQASRRALATDEWLRVEGCNNVYALGDCATINQRKVMDDITAIFKKADKDNSGTLTVKEFQEAMKDISERYPQVELYLKNKQMRNIADLLKDVKGDDKKESIELNIEELTTALSKVDSQMKFLPATAQVASQQGTYLATCFDRMEECEKSPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEKTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTKALVVSDWTRRFIFGRDSSSI 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01844 466 Pfam EF hand 269 295 IPR002048 GO:0005509
Vian6g01844 466 Gene3D - 313 465 - -
Vian6g01844 466 Gene3D - 1 312 - -
Vian6g01844 466 SUPERFAMILY FAD/NAD(P)-binding domain 107 261 IPR036188 -
Vian6g01844 466 SUPERFAMILY FAD/NAD(P)-binding domain 3 159 IPR036188 -
Vian6g01844 466 ProSitePatterns EF-hand calcium-binding domain. 277 289 IPR018247 -
Vian6g01844 466 SUPERFAMILY EF-hand 258 353 IPR011992 -
Vian6g01844 466 Coils Coil 328 348 - -
Vian6g01844 466 ProSiteProfiles EF-hand calcium-binding domain profile. 264 299 IPR002048 GO:0005509
Vian6g01844 466 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 310 465 - -
Vian6g01844 466 PANTHER NADH DEHYDROGENASE 2 466 IPR045024 GO:0003954|GO:0006116
Vian6g01844 466 SMART efh_1 268 296 IPR002048 GO:0005509
Vian6g01844 466 Pfam Pyridine nucleotide-disulphide oxidoreductase 9 266 IPR023753 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01844 Vian-Chr6 35848921 35851844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01844 5 466 Chloroplast and Mitochondria Gene Families AT4G21490 75.810 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01844 K03885 - gmx:100802661 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03132 1 52297854 52302231 Vian6g01844 6 35848921 35851844 PCT