Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01842 ATGAAGTTCAACCCAAGAGTATCGAGCAGCCGCCGCAAGAGCCGGAAGGCTCACTTCACCGCGCCGTCTAGCGTGCGGCGGGTGCTGATGAGCGCTCCTCTCTCAGCGGAGCTCCGGTCCAAGTACAACGTGCGCTCGATTCCGGTGAGGAAAGAGGATGAAGTGCAGGTGGTTCGTGGAACGTACAAGGGACGCGAGGGGAAGGTGACTCAGGTGTACCGTCGCAAGTGGGTCATCCACATCGAGCGCATCACTCGCGAGAAGGTTAATGGTTCAACTGTCAACGTAGGAATCCACCCTTCCAAGGTTGTGGTGACGAAGCTGAAACTGGACAAAGATCGCAAGGCCATTCTCGATCGCAAGGCGAAGGGTCGCGCCGCCGCTGATAAGGAGAAGGGCACCAAGTTCGCTCCCGAAGACATCATGCAAACCGTTGATTAA 441 0.5692 MKFNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSAELRSKYNVRSIPVRKEDEVQVVRGTYKGREGKVTQVYRRKWVIHIERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKAKGRAAADKEKGTKFAPEDIMQTVD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01842 146 MobiDBLite consensus disorder prediction 1 20 - -
Vian6g01842 146 SUPERFAMILY Translation proteins SH3-like domain 8 125 IPR008991 -
Vian6g01842 146 CDD KOW_RPL26 53 105 IPR041988 GO:0003723
Vian6g01842 146 ProSitePatterns Ribosomal protein L24 signature. 52 69 IPR005825 GO:0003735|GO:0005840|GO:0006412
Vian6g01842 146 MobiDBLite consensus disorder prediction 121 137 - -
Vian6g01842 146 Gene3D - 1 143 IPR014722 -
Vian6g01842 146 SMART kow_9 48 75 IPR005824 -
Vian6g01842 146 Hamap 50S ribosomal protein L24 [rplX]. 9 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vian6g01842 146 FunFam 60S ribosomal protein L26 1 144 - -
Vian6g01842 146 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vian6g01842 146 NCBIfam 50S ribosomal protein L24 8 122 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vian6g01842 146 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 141 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vian6g01842 146 MobiDBLite consensus disorder prediction 121 146 - -
Vian6g01842 146 Pfam KOW motif 53 82 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01842 Vian-Chr6 35841009 35841449 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01842 1 146 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 82.192 1.63e-89 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01842 K02898 - gmx:100775705 259.61