Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01830 ATGAACAGTAGTGGTACAACAACTACTACTTTTTTTAAAAACCCCGTTTTCACACTTTCTCTCACTTACAAAACACTCACTGGTCCTTCTTCTCTGCTTTCTCTCTCTAAAACCCTCTTCTTTTTCTCTCTCCTTCCTCTCTTTCTCTCGCTGATTGCAGATCAGGCCGCGCAAACCGTTGCGGTTGTGGATTCGGTGGGGTTCAGAGCCGCTATGGCTTCGGCTTCTTCTTCGACCAAACTGTGTTTCAATTCTGACTGCAAAGAATTGAGGCCCGAAAGACCTAAGAAAGGGTGGAGGCTCCGTAGCGGAGAACTAGCCGAGCTCTGCGATCGATGCGGCTCTGCTTTTGAAGAAGGGAGGTTCTGTGAAATTTTCCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTAGAAAGAGAGTTCATTGTGGATGTATTGTTTCAAGTCATTCCTTCATGTTGCTGGATCCCGGAGGGATTGAATGTTATGCATGTGCCCGCAAAAATATTATTATGCCTTCTAACCTGCCGTGGCCACAATCTTTTTCCCTTCAAAATCGTTTATCTGATAGACTTAGAGATCTATCTGCTAAAGGTTGGAATCAGTTGGCTGGATCAGGTCCTGTACCCTGGAAGCAAGCGCCCAGTCTGTTCAATTCTGCTTCTTCGACTGACCTGATACCAGATGTGCCTTCTTTAGCTGAATTATCCAATAGCTTTGACAAAATGTATTGCAATGAAAGATTACCTGCCTCAGCCTTGGAAAAGAAAAGCGAGGATTATACTGGATTACCAGTTCATTGGAATGTTACAATTTGCCCACGGGAGATGAAGCTTATGAATGGAATGAGGAATGAGGACAAAGCAAGTTCATGTTTAAATATGTGTCAGCAGCCTTCTTCTCTGAAGGAAGAGTCATCGACTCAACCATTTGGTTTGCCGGTGCCTAATTCATGCCAAAATGAAAGAAATGGCCAGCTTGGGGTAACTGGAAGTCACCCTCAACAAACTCCACCACCTCCAGGAAAGCATTTTAATGGCACTATGCATTTAGCACCTGACTCATCAGGTGAGGCTCAGGTTCGCAATGGGCGACCACGAGCAGATGCCCGAGGAAGAAACCAGTTGCTGCCACGGTACTGGCCCAGGTGTACTGATCTTGAACTACAACAAATATCCATAGATTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACCTTGAGTGCAAGTGATGCTGGACGAATTGGGCGTTTAGTCCTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCCGAAGGATTGCCGCTTAAAATCCTTGATGCAAAGGGAAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTAGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTACAGGCTGGTGACACTGTAACATTTAGCCGTTTGGAGCCAGAGGGACGGTTGGTTATGGGATTTAGAAAGGCTTCGAGTGCTGTGCCATCCGACCAGGACAATGAAACTAATAAGTCTGGAAATGGATTTTCTGCACATGGTGAAGTTGAATTGGCTGATCCCAATTCATGGTCTAAAGTTGACAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCATTAATATCTAGAAAAAGAAAAAGTGGCATATTGGGCTCAAAAAGTAAACGTCTAAGAATTGAAAATGAGGATTTAATAGAGCTGAAGATTACGTGGCAAGAAGCTCAAGGTCTGCTCCGGCCCCCTCCTAGCCACATTCCGAGCATCGTTGTGATTGAAGGTTTTGAATTTGAGGAATACGAGGAAGCTCCAGTGCTTGGGAAGCCAACAATTTTTACCAGTGATAATGTGGGTGAAAAGATCCAGTGGGCTCAATGCGAAGATTGTCTCAAGTGGCGCAAATTACCAGCAAGTGCGCTTCTTCCATCAAAATGGACGTGTGCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACCAGAGCTGACAGCAGAGCAACTTGAGAATTTGCTACCTCCTTGTAATTCAGCTGTTCCCAAAAAAATGAAGGCCGCCAAACAGGATCCTGATAATGCTGAAGCTTTGGAGGGACTTGACACCCTTGCAAATTTAGCTATCCTGGGAGAGGGTGAAGCACTCCCAGCATCCGCCCAGGCCACAACTAAGCACCCGCGCCATAGACCTGGCTGTTCTTGCATCGTTTGCATTCAACCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGTACGTGTAATGTATGCTTAACAGTGAAGCGACGTTTCCGTACCCTTATGTTACGACGCGAGAAGAAACAATCAGAAAAAGAAGCAGAGACAACTCGTAAAAAGCAACAGCAACAACATTCTCAACCACTACCTTCGTCTGAAATTTTGCTTGACGAAGATTCATTACCCTGTAGTAACACCGGTGACAGTAGCCCGAACCACAACAAAGAGGGTAATGATGGTTCTGATGATGATCCTAACAGAATAAAATCATCTGTTTCACCATTCAAAGGCCAAATTGACCTCAATATCCAGCCAGAGCGAGAAGAAGAATTGTCCCCTGGTTCAGATTCTGGTGGCATGATGAAGTTGCTCCATGATGCTACTGAGAGGTATCTGAAGCAGCAGACTGTGAACTCGGGTACTGGAGATTCTGCTGGCAGTCAGTCACAGCTGGTAGGAGATGCAATGAGGGAAGATAAACTTAGCAATGGTGTTACCCATGGCAGTAGTAGTCATAGTACTGATAAGGAACATGCTCAATCTTTGTCTATGAATGTGTGA 2853 0.4497 MNSSGTTTTTFFKNPVFTLSLTYKTLTGPSSLLSLSKTLFFFSLLPLFLSLIADQAAQTVAVVDSVGFRAAMASASSSTKLCFNSDCKELRPERPKKGWRLRSGELAELCDRCGSAFEEGRFCEIFHSNASGWRSCETCRKRVHCGCIVSSHSFMLLDPGGIECYACARKNIIMPSNLPWPQSFSLQNRLSDRLRDLSAKGWNQLAGSGPVPWKQAPSLFNSASSTDLIPDVPSLAELSNSFDKMYCNERLPASALEKKSEDYTGLPVHWNVTICPREMKLMNGMRNEDKASSCLNMCQQPSSLKEESSTQPFGLPVPNSCQNERNGQLGVTGSHPQQTPPPPGKHFNGTMHLAPDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAVPSDQDNETNKSGNGFSAHGEVELADPNSWSKVDKSGYIAKEALGSKSLISRKRKSGILGSKSKRLRIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTIFTSDNVGEKIQWAQCEDCLKWRKLPASALLPSKWTCADNSWDPERSSCSAAPELTAEQLENLLPPCNSAVPKKMKAAKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQHSQPLPSSEILLDEDSLPCSNTGDSSPNHNKEGNDGSDDDPNRIKSSVSPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDATERYLKQQTVNSGTGDSAGSQSQLVGDAMREDKLSNGVTHGSSSHSTDKEHAQSLSMNV 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01830 950 FunFam B3 domain-containing transcription repressor VAL1 384 511 - -
Vian6g01830 950 MobiDBLite consensus disorder prediction 895 915 - -
Vian6g01830 950 MobiDBLite consensus disorder prediction 303 373 - -
Vian6g01830 950 MobiDBLite consensus disorder prediction 805 838 - -
Vian6g01830 950 MobiDBLite consensus disorder prediction 506 529 - -
Vian6g01830 950 Pfam B3 DNA binding domain 406 505 IPR003340 GO:0003677
Vian6g01830 950 SUPERFAMILY DNA-binding pseudobarrel domain 403 505 IPR015300 -
Vian6g01830 950 Coils Coil 788 808 - -
Vian6g01830 950 ProSiteProfiles Zinc finger CW-type profile. 634 684 IPR011124 GO:0008270
Vian6g01830 950 Gene3D - 384 510 IPR015300 -
Vian6g01830 950 MobiDBLite consensus disorder prediction 788 950 - -
Vian6g01830 950 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 79 909 - -
Vian6g01830 950 SMART B3_2 406 507 IPR003340 GO:0003677
Vian6g01830 950 MobiDBLite consensus disorder prediction 927 950 - -
Vian6g01830 950 MobiDBLite consensus disorder prediction 303 335 - -
Vian6g01830 950 CDD B3_DNA 404 505 IPR003340 GO:0003677
Vian6g01830 950 MobiDBLite consensus disorder prediction 788 804 - -
Vian6g01830 950 ProSiteProfiles B3 DNA-binding domain profile. 406 507 IPR003340 GO:0003677
Vian6g01830 950 Gene3D - 638 691 - -
Vian6g01830 950 Pfam CW-type Zinc Finger 639 681 IPR011124 GO:0008270
Vian6g01830 950 MobiDBLite consensus disorder prediction 509 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01830 Vian-Chr6 35731948 35743202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01830 337 941 B3 DNA Binding Superfamily AT4G32010 46.743 8.49e-165 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian6g01830 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01830 K09287 - gmx:100782114 1673.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01830 6 35731948 35743202 Vian6g01830 6 35731948 35743202 ECH