Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01829 ATGTATGACGTGGAGGCTGGAAAGGAAAATGTGAACCTGGATAAGTTCTTTGATGAGGTGGAGAATGTGAAGGAAGACATGAGATCAGTGGAGAAGTTGTATAGAAAATTGCAAGAGTCCAATGAAGAGAGCAAGATCGTTCATAACGCTAAAACCATGAAAGATCTTCGAGCAAAAATGGATCAAGATGTTCAACAGGTTCTCAAACGCGTCAAAATGATAAAGGGCAAGCTTGAAGCTTTGGAACGTTCAAATGCAGCCAATAGAAACCTCCCAGGATGTGGTCCGGGTTCCTCAACAGATCGAACAAGAACCTCAGTGGTCAGTGGCTTAGGGAAGAAACTGAAGGACATGATGGACGATTTTCAAGGACTGAGAGCAAGAATGCAAAACGAGTACAAGGAAACCGTGGAACGTAGGTACTTCACCATAACAGGAGAGAAGGCCGATGAAGATACCATTGAGAACTTGATATCAAGCGGTGAAAGTGAAAGTTTTCTTCAAAGGGCAATTCAAGAACAGGGTAGAGGTCAGATAATGGACACCATATCAGAGATTCAAGAGAGACATGATTCTGTTAAGGAGATAGAGAAGAACTTGATGGAGTTGCATCAGGTGTTTTTGGACATGGCAGCTCTTGTAGAGTCTCAAGGTCAGCAACTAAACAACATTGAGAGTCATGTCGCACATGCAAGTTCTTTTGTAAGAAGAGGCACAGAACAACTGCATGAAGCTAGAGAGTATCAAAAGAGCTCTAGAGAATGGACTTGTTACGCCATTCTTCTTGGCATTGTTCTTGTCATTGTGCTTTTGTTTCCTCTCTTGACATCACTTTTGCCTCACTTGTTATATTGA 855 0.4211 MYDVEAGKENVNLDKFFDEVENVKEDMRSVEKLYRKLQESNEESKIVHNAKTMKDLRAKMDQDVQQVLKRVKMIKGKLEALERSNAANRNLPGCGPGSSTDRTRTSVVSGLGKKLKDMMDDFQGLRARMQNEYKETVERRYFTITGEKADEDTIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDSVKEIEKNLMELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLHEAREYQKSSREWTCYAILLGIVLVIVLLFPLLTSLLPHLLY 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01829 284 Coils Coil 13 43 - -
Vian6g01829 284 MobiDBLite consensus disorder prediction 91 106 - -
Vian6g01829 284 FunFam Syntaxin 132 176 276 - -
Vian6g01829 284 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 10 140 - -
Vian6g01829 284 SMART SynN_4 8 134 IPR006011 GO:0016020
Vian6g01829 284 PANTHER SYNTAXIN 22 268 IPR045242 -
Vian6g01829 284 SUPERFAMILY t-snare proteins 11 238 IPR010989 GO:0016020|GO:0016192
Vian6g01829 284 ProSitePatterns Syntaxin / epimorphin family signature. 189 228 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vian6g01829 284 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 183 245 IPR000727 -
Vian6g01829 284 Coils Coil 64 84 - -
Vian6g01829 284 SMART tSNARE_6 178 245 IPR000727 -
Vian6g01829 284 Gene3D - 174 275 - -
Vian6g01829 284 CDD SynN 13 170 IPR006011 GO:0016020
Vian6g01829 284 Pfam SNARE domain 220 271 IPR000727 -
Vian6g01829 284 MobiDBLite consensus disorder prediction 87 106 - -
Vian6g01829 284 Gene3D - 9 142 - -
Vian6g01829 284 CDD SNARE_syntaxin1-like 182 242 - -
Vian6g01829 284 Pfam Syntaxin 15 218 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01829 Vian-Chr6 35729546 35730400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01829 1 283 SNARE and Associated Proteins AT1G61290 78.799 2.27e-167 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01829 K08486 - gmx:100818999 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03144 1 52479149 52480066 Vian6g01829 6 35729546 35730400 PCT