LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian6g01815	ATGGCTGATCTTGTGACAGACTTGCCTGGTCAACCTCCTGTAGATTTTCAGCACTACGCTGGATACGTCACAGTCAATGAAACCAGTGGAAGAGCACTCTTTTACTGGTTCTACGAAGCCATGACCAAACCTCAAGAAAAACCTTTGGTTCTGTGGCTTAATGGAGGTCCTGGGTGTTCGTCTGTTGGATATGGAGCAACACAGGAAATTGGACCATTTTTAGTGAACACAGATGGCAAAAGCCTTATGTTTAATAACTTCACATGGAACAAAGAGGCCAACATGTTATTCCTGGAATCTCCTGTTGGGGTTGGCTTTTCCTATTCAAATACAACCACCGAATATGCACAATTGGGAGATGACTTCACAGCTAATGATGCTTACACTTTTCTGCACAATTGGTTCCTCAAATTTCCATTATATAGAACAAGGACATTTTACATAGCTGGAGAAAGCTATGCAGGAAAGTATGTACCGGAGCTGGCTGAACTCATCCAAGACAGAAACAAGGACCCTTCCCTTCACATTGATCTCAAGGGAATTTTGCTGGGCAACCCTGAAACATCTGATGCTGAGGATTGGTCAGGTATGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGATGAAACATACAAAACAATCAAAGCAAGCTGTGACTTCAATAGCAGTGACCCTTGGAGTAACAAAGATTGTAGTCAAGGGGTGGATGAAGTTCTCAAACAGTACAATGAAATTGATATCTACAGCCTCTACACCTCCACATGCTTCGCCAGTACAGCACGTTCAAACGATCCATCCATGCAAATGGTCATGCTTCGCTCATCTAAAATGATGCCAAGAATCATGGGTGGTTATGACCCATGTTTGGATGACTATGCTAAAACATTTTACAATAAACCAGATGTTCAGAAGGCTCTCCATGCCAGTGATGGGCAAAATCTCAGGAATTGGAGTATTTGCAATGACAGCATATTCAAGAGCTGGAAACAATCACAGACTTCTGTTATCCCAATCTACAAGAAGCTGATTTCAGCTGGACTTAAGATTTGGATTTACAGTGGAGACACTGATGGAAGGGTTCCAGTGCTGTCCACAAGATACAGCTTAAGTATTCTAGATTTGCCAATCACCAAGAAATGGAGACCTTGGTACCATCAAAAGGAGGTAAGTGGGTGGTACCAGGAATACGAGGGGCTAACGTTTGCGACATTTCGGGGAGCTGGCCATGCAGTGCCATGTTTCAAACCAAGCAACTCACTCGCATTCTTCTCCTCCTTTCTTAGAGCACAATCACCACCCTCTACTAAATAA	1314	0.4315	MADLVTDLPGQPPVDFQHYAGYVTVNETSGRALFYWFYEAMTKPQEKPLVLWLNGGPGCSSVGYGATQEIGPFLVNTDGKSLMFNNFTWNKEANMLFLESPVGVGFSYSNTTTEYAQLGDDFTANDAYTFLHNWFLKFPLYRTRTFYIAGESYAGKYVPELAELIQDRNKDPSLHIDLKGILLGNPETSDAEDWSGMVDYAWSHAVISDETYKTIKASCDFNSSDPWSNKDCSQGVDEVLKQYNEIDIYSLYTSTCFASTARSNDPSMQMVMLRSSKMMPRIMGGYDPCLDDYAKTFYNKPDVQKALHASDGQNLRNWSICNDSIFKSWKQSQTSVIPIYKKLISAGLKIWIYSGDTDGRVPVLSTRYSLSILDLPITKKWRPWYHQKEVSGWYQEYEGLTFATFRGAGHAVPCFKPSNSLAFFSSFLRAQSPPSTK	437

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian6g01815	437	FunFam	Carboxypeptidase	286	432	-	-
	Vian6g01815	437	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	5	417	IPR001563	GO:0004185\|GO:0006508
	Vian6g01815	437	FunFam	Carboxypeptidase	1	258	-	-
	Vian6g01815	437	SUPERFAMILY	alpha/beta-Hydrolases	3	430	IPR029058	-
	Vian6g01815	437	ProSitePatterns	Serine carboxypeptidases, serine active site.	148	155	IPR018202	GO:0004185
	Vian6g01815	437	Gene3D	alpha/beta hydrolase	1	258	IPR029058	-
	Vian6g01815	437	Gene3D	-	289	325	-	-
	Vian6g01815	437	Pfam	Serine carboxypeptidase	9	429	IPR001563	GO:0004185\|GO:0006508
	Vian6g01815	437	Gene3D	-	336	430	-	-
	Vian6g01815	437	PRINTS	Carboxypeptidase C serine protease (S10) family signature	85	97	IPR001563	GO:0004185\|GO:0006508
	Vian6g01815	437	PRINTS	Carboxypeptidase C serine protease (S10) family signature	98	108	IPR001563	GO:0004185\|GO:0006508
	Vian6g01815	437	PRINTS	Carboxypeptidase C serine protease (S10) family signature	134	159	IPR001563	GO:0004185\|GO:0006508
	Vian6g01815	437	PRINTS	Carboxypeptidase C serine protease (S10) family signature	400	413	IPR001563	GO:0004185\|GO:0006508
	Vian6g01815	437	FunFam	Carboxypeptidase	336	430	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian6g01815	Vian-Chr6	35573951	35577273	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian6g01815	294	431	Calmodulin-binding Proteins	AT2G22960	32.374	4.10e-15	71.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian1g03165	1	52791010	52794314	Vian6g01815	6	35573951	35577273	PCT