Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01799 ATGCAGATTGCAGAGTATACCAGGATCATTATGACTTGTGGCTGCTTTGGAGCCAAATCTGCTAAGAAAAGACGCTCTTCTAATGCTGCTGGCGAGATTGATGGTTATCCCCTTGATAATGTTAGGCAATTTTCTGATAGAGAACTGAGATTGGCAACTGATAATTACCACTCAAACAATAAGATAGGACGAGGAGGTTTTGGAACAGTTTACCAGGGAACCTTAAAAGATGGAAGACGTATAGCAGTGAAGACTCTCTCATTTTGGTCAAAGCAGGGAGTTCGAGAATTTTTGACTGAAATTAAAACTTTGTCAAATGTTAAACATCCAAATCTTGTTGAATTGATTGGATTCTGCATCCAAGGACCCAGTCGTACATTAGTCTACGAGTATGTGGAAAATGGGAGCCTTAACAGTGCACTACTTGGCACAAGGAATGAAAACATTAAACTAGACTGGAGAAAAAGATCTGCCATCTGTGTAGGTACTGCTAAGGGTCTTGCTTTTCTTCATGAAGAACTTTCACCACCAATAGTGCACAGAGACATCAAAGCTAGTAATGTACTACTTGACAAAAATTTCAATCCCAAAATAGGTGATTTTGGGTTGGCTAAATTATTTCCAGACGGTATCACTCACGTTAGCACAAGAATTGCTGGAACAACTGGTTACTTAGCACCAGAATATGCAATAGGTGGTCAGTTAACCAAGAAGGCTGATATATACAGCTTTGGGGTTCTTATACTTGAAATAGTTAGTGGCAGAAGCAGTGCCAGGAGGACAAACGAGACAAACGGAGAAGGATCACCCAAATTCCTCTTGGAATGGGCCTGGCAACTTTATGAGGAGGGGAAATTGTTGGAGTTTGTAGATCCAGAAATGGAAGAGTTTCCTGAGGAAGAGGTACTGAGATACATGAAGGTTGCACTTTTCTGCACACAGTCAGCAGCAGGTAGAAGGCCTTTGATGATACAAGTTGTTAATATGCTATCTAAGGCAATCCAACTCAATGAGAAAGAACTTACAGCACCAGGATTATTCACAGATGAAAGAGAATCTTCTAATAGGAACTCACAACCTGTTCCTTTTATTACCTCTACTCATCTTGCTATTACTCAGGTCACCCCACGATGA 1134 0.4065 MQIAEYTRIIMTCGCFGAKSAKKRRSSNAAGEIDGYPLDNVRQFSDRELRLATDNYHSNNKIGRGGFGTVYQGTLKDGRRIAVKTLSFWSKQGVREFLTEIKTLSNVKHPNLVELIGFCIQGPSRTLVYEYVENGSLNSALLGTRNENIKLDWRKRSAICVGTAKGLAFLHEELSPPIVHRDIKASNVLLDKNFNPKIGDFGLAKLFPDGITHVSTRIAGTTGYLAPEYAIGGQLTKKADIYSFGVLILEIVSGRSSARRTNETNGEGSPKFLLEWAWQLYEEGKLLEFVDPEMEEFPEEEVLRYMKVALFCTQSAAGRRPLMIQVVNMLSKAIQLNEKELTAPGLFTDERESSNRNSQPVPFITSTHLAITQVTPR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01799 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Vian6g01799 377 Gene3D Phosphorylase Kinase; domain 1 28 131 - -
Vian6g01799 377 SMART serkin_6 56 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01799 377 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 358 - -
Vian6g01799 377 SUPERFAMILY Protein kinase-like (PK-like) 37 330 IPR011009 -
Vian6g01799 377 ProSitePatterns Protein kinases ATP-binding region signature. 62 84 IPR017441 GO:0005524
Vian6g01799 377 ProSiteProfiles Protein kinase domain profile. 56 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01799 377 FunFam cold-responsive protein kinase 1 27 131 - -
Vian6g01799 377 FunFam Putative LRR receptor-like serine/threonine-protein kinase 132 342 - -
Vian6g01799 377 Pfam Protein kinase domain 56 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01799 377 CDD STKc_IRAK 62 332 - -
Vian6g01799 377 Gene3D Transferase(Phosphotransferase) domain 1 132 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01799 Vian-Chr6 35471632 35474361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01799 44 349 Receptor kinase-like Gene Family AT1G56120 51.634 2.60e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian6g01799 Pkinase 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01799 - - gmx:100809588 625.165