Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01791 ATGTACATAGCTTCCATGGGAAGGTCTTTCAAGGACTCTCTGAAACTGCTTGAAGCTGATATTCACCATGCCAATACCCTGGCATCAGATTTTCCAAGGGAATATGACGGTGCATGCCTTCAAATGAGAATGTCATACAGTATGGCAGCACACCTATTTCTCTTTTTGGTACAATGGACAGATTGCAATCTTGCCGGGGCCCTAGGATTGTTAAGAATCCTAATATACAAGGTTTATGTAGATGGGACAACTACCATGTCTACCCATGAAAGGAAAGCAAGTATTAGAGAATTCTATGCGGTCATATATCCCTCATTGTTGCAACTGCAAAAAGGTGTAACTGATACAGAGGACAAAAAACAGAAGGCTGTATGCTTGGAGAGGTATCGGAAAAGAGATGAAGATGAGCACAGGCAGCCTTCGGATATAGACATTGAAAGGGAAGAGGAATGTGGAATATGCATGGAGATGAACAGTAAGATTGTGTTACCCGACTGCAACCATGTCATGTGCCTGAAATGTTACCACGAATGGAGAACAAGATCACAGTCATGCCCCTTTTGCCGTGACAGTCTCAAGAGAGTAAACTCAGGCGATCTCTGGGTGTTCACTGATGGTAGGGATGTTGTAGACATGGCAACAGTGACAAGAGAGAATCTTAAAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGATCATTCCAGACTCTCTTTTTGACACTTATGACTCTCATCTAAGATGA 744 0.4234 MYIASMGRSFKDSLKLLEADIHHANTLASDFPREYDGACLQMRMSYSMAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCLERYRKRDEDEHRQPSDIDIEREEECGICMEMNSKIVLPDCNHVMCLKCYHEWRTRSQSCPFCRDSLKRVNSGDLWVFTDGRDVVDMATVTRENLKRLFMYIDKLPLIIPDSLFDTYDSHLR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01791 247 FunFam RING/U-box superfamily protein 119 198 - -
Vian6g01791 247 SUPERFAMILY RING/U-box 145 196 - -
Vian6g01791 247 SMART ring_2 151 188 IPR001841 -
Vian6g01791 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Vian6g01791 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 213 IPR013083 -
Vian6g01791 247 PANTHER RING FINGER PROTEIN 41, 151 8 244 - -
Vian6g01791 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Vian6g01791 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01791 Vian-Chr6 35398561 35404172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01791 151 206 C3H Transcription Factor Family AT5G01960 39.286 1.83e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01791 K25840 - gmx:100789769 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03186 1 53164976 53168182 Vian6g01791 6 35398561 35404172 PCT