Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01780 ATGGCACTTCACCAATACATTGCTGGGGATTTGAAAACCATCGAAGAAACTGTGACCGAGACAGAAAACTCTAATGGTTGTTTTGACTGTAACATCTGCTTAGACTTTGCACATGATCCAGTGGTGACCCTATGTGGCCACCTCTACTGTTGGCCGTGCATCTACAAGTGGCTTCTCGTCCAACATGATTCTCTTACAACCGCTGAGCGCCCTCAGTGCCCCGTTTGCAAAGCTGTTATATCCAATAGCACAATGGTTCCACTCTATGGCCGTGGCCATTCCACAGCTGAAGGAAAAACATCTTGTGATGTTTTGATACCTCCAAGACCACCAGCTTCATGTGCTCAAGTTCTTGTGGCAGCACCACCTCGAAGGGGTCAGCGTCTTCCATATCGTAATCCTTACCAAGGTCACTATTTCAGCTCTCGTCCATACCAAGAAGAGGACGCCACTCCTCAAACTCTCAATCTTGGATCGCACCACTACCCTGTGACTGGAATGTTTGGGGAGATGATTTATTCCAGAGTGTTTGGCAACCCAGAAAATTTGTATGCATACCCCAATTCTTATCAGTTCATGGGAAGTTCTACCACTAGATTGAGAAGGCAAGAGATGCAGGCACACAAATCTTTGAACAGAATCTCTATTTTTCTCTTTTGCTGCTTCCTTATCTGTCTTCTTGTCTTTTAA 690 0.4536 MALHQYIAGDLKTIEETVTETENSNGCFDCNICLDFAHDPVVTLCGHLYCWPCIYKWLLVQHDSLTTAERPQCPVCKAVISNSTMVPLYGRGHSTAEGKTSCDVLIPPRPPASCAQVLVAAPPRRGQRLPYRNPYQGHYFSSRPYQEEDATPQTLNLGSHHYPVTGMFGEMIYSRVFGNPENLYAYPNSYQFMGSSTTRLRRQEMQAHKSLNRISIFLFCCFLICLLVF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01780 229 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Vian6g01780 229 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Vian6g01780 229 SUPERFAMILY RING/U-box 26 89 - -
Vian6g01780 229 SMART ring_2 30 76 IPR001841 -
Vian6g01780 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vian6g01780 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 103 IPR013083 -
Vian6g01780 229 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Vian6g01780 229 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01780 Vian-Chr6 35306534 35307223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01780 23 215 C3H Transcription Factor Family AT4G27470 42.647 4.26e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01780 K10666 - gmx:100816864 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01780 6 35306534 35307223 Vian6g01780 6 35306534 35307223 ECH