Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01769 ATGGGCGAAGATAGTAATTCTTGGATTAGGAGGACAAAGTTTTCACACACAGTGTGCCATCGTTTGGATTCATCTAGATTAGGTCATGTTCCTATCGGCATTCAGTCAGAGCAAAAATCAAGCCCTGCCTCAGAGGTTCAGAGGCACCCCATAACGAACAGGCAGAGATCTTCGTCACCATTGCCTGTGACTTTTCTTTCTGAGGCCTTCAGGGAAGCTAGACATGATCAGAAGAGGTTCTCCACACCGAATCCCCAGAGAGAAAATAGGACTACGGGGAAGGAGTTGAACAAGGATTCTCCGGAGACTAAGGAATCAAGTTCAAAGTTTCCTTCCCGTAGTCCAAGTAAGAAGGTGAAGTCAAAGCACAGCAAGGATGCAGCATGGACCAAGTTTTTGGATAATGGTGGAAGCAAGATTACTGCTGTCGAAACAGCCGAAGAGTGGAATATTGACATGTCTCAGCTGTTTTTTGGCCTAAAGTTTGCTCATGGAGCACATAGCCGACTTTACCATGGTGTATATAAGGATGAATCAGTTGCAGTTAAACTCATTATGGAACCCGAAGACGATGAAAGTGGAGATTTGGCTTCTCGATTAGAAAAACAGTTCGTTAGAGAAGTTACCCTCTTATCTCGTCTTCACCATCAAAATGTTATAAAGTTCTCAGCAGCGTGCAGAAAGCCACCTGTTTATTGTATCATCACAGAATATCTTTCGGAAGGTTCCTTGAGGGCATATTTGCATAAGTTGGAGCACCAAACTATTTCTCTACAAAAGCTTTTAACTTTTGCCCTTGACATTGCTCGGGGTATGGAATATATACATTCTCAAGGTGTGATTCATCGAGACCTTAAGCCAGAGAATATCCTCATAGGCGAAGGTTGTCGCCTTAAAATTGCTGATTTTGGCATTGCATGCGAGGAAGCCTCTTGTGACATACTGGCCGATGACCCAGGCACATACCGTTGGATGGCACCCGAGATGATCAAACGTAAATCCTATGGAAGAAAGGTTGATGTGTACAGTTTTGGGCTTATCTTATCGGAGATGTTGACTGGAAATATTCCATATGAGGATATGAATCCAATACAGGCTGCTTTTGCCGTTGTAAACAAGAATTCAAGGCCAGTTATTCCATCAGACTGTCCAGCTGCTATGAGAGCTTTGGTTGAGCAGTGTTGGAGCTTGCAACCAGATAAGAGGCCTGAATTCTGGCAGATTGTGAAGATATTAGAGCAATTTCAATCTTCACTTGCTCGTGATGGAACCCTTACTCTGGTGCCGAACCCTTGTTGGGATAATAAAAAAGGGCTTCTTCATTGGATTCAAAAGCTTGGTCCTGTGCATCAAAATAGTGGCCCTGTGCCTAAACCCAAGTTCACATGA 1389 0.4363 MGEDSNSWIRRTKFSHTVCHRLDSSRLGHVPIGIQSEQKSSPASEVQRHPITNRQRSSSPLPVTFLSEAFREARHDQKRFSTPNPQRENRTTGKELNKDSPETKESSSKFPSRSPSKKVKSKHSKDAAWTKFLDNGGSKITAVETAEEWNIDMSQLFFGLKFAHGAHSRLYHGVYKDESVAVKLIMEPEDDESGDLASRLEKQFVREVTLLSRLHHQNVIKFSAACRKPPVYCIITEYLSEGSLRAYLHKLEHQTISLQKLLTFALDIARGMEYIHSQGVIHRDLKPENILIGEGCRLKIADFGIACEEASCDILADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILSEMLTGNIPYEDMNPIQAAFAVVNKNSRPVIPSDCPAAMRALVEQCWSLQPDKRPEFWQIVKILEQFQSSLARDGTLTLVPNPCWDNKKGLLHWIQKLGPVHQNSGPVPKPKFT 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01769 462 FunFam serine/threonine-protein kinase HT1 241 431 - -
Vian6g01769 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Vian6g01769 462 MobiDBLite consensus disorder prediction 32 125 - -
Vian6g01769 462 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 76 418 - -
Vian6g01769 462 ProSiteProfiles Protein kinase domain profile. 156 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01769 462 Gene3D Phosphorylase Kinase; domain 1 144 240 - -
Vian6g01769 462 MobiDBLite consensus disorder prediction 69 83 - -
Vian6g01769 462 Pfam Protein tyrosine and serine/threonine kinase 161 412 IPR001245 GO:0004672|GO:0006468
Vian6g01769 462 PRINTS Tyrosine kinase catalytic domain signature 274 292 IPR001245 GO:0004672|GO:0006468
Vian6g01769 462 PRINTS Tyrosine kinase catalytic domain signature 236 249 IPR001245 GO:0004672|GO:0006468
Vian6g01769 462 PRINTS Tyrosine kinase catalytic domain signature 320 330 IPR001245 GO:0004672|GO:0006468
Vian6g01769 462 PRINTS Tyrosine kinase catalytic domain signature 339 361 IPR001245 GO:0004672|GO:0006468
Vian6g01769 462 PRINTS Tyrosine kinase catalytic domain signature 383 405 IPR001245 GO:0004672|GO:0006468
Vian6g01769 462 MobiDBLite consensus disorder prediction 91 106 - -
Vian6g01769 462 SMART serkin_6 156 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01769 462 SUPERFAMILY Protein kinase-like (PK-like) 141 412 IPR011009 -
Vian6g01769 462 MobiDBLite consensus disorder prediction 34 64 - -
Vian6g01769 462 FunFam Serine/threonine-protein kinase isoform 1 146 240 - -
Vian6g01769 462 CDD STKc_MAP3K-like 163 412 - -
Vian6g01769 462 Gene3D Transferase(Phosphotransferase) domain 1 241 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01769 Vian-Chr6 35165784 35167569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01769 1 462 MAP Kinase Kinase Kinase AT5G58950 54.373 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vian6g01769 PK_Tyr_Ser-Thr 4.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01769 - - gmx:100500590 811.601