Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01768 ATGGAGAACAACCCTAGTCCTTCCCGAGTTGATAGAAAATTCATTGAGAGGGACAGAAGAAACCAAATGAAGGCTCTCTTCCGCAGACTCAACTCTCTTGTGCCTCATCAAACATCAAAGGCGGTTTCACTGCCGGATCAGGTAGAAGAAGCAACAAACTACATAAAGAAATTACAGATGAATATGGAGAAAATGGAGAAGAAGAAGAACAAGCTACTAGGAATAGAAAGACCAAATGTGAGCATGAATGGAGGAGGAGAGAGAGTAGGGTTTAAATCTCCACGGATTGAGATCCGACAAATGGGTTCAGCCGTAGATGTTGTTCTGATAACTGGGTTGGATTCTCAGTTCATGTTCAGTGAAACCATTCGTGTTCTTCATGAAGAAGGATTAGATGTTGTTAACGCTAGTTATAATGTTATCCAAGATGCAGTTTTCCATTCAATACACTGTCATCAGGACGAGAAATTTGCCAACGGAGCTGCTAGGATATCTGAGAGGCTAAAGAAATCCATCTACGAGTCTAGCTACTGTGCTTTTTAA 543 0.4125 MENNPSPSRVDRKFIERDRRNQMKALFRRLNSLVPHQTSKAVSLPDQVEEATNYIKKLQMNMEKMEKKKNKLLGIERPNVSMNGGGERVGFKSPRIEIRQMGSAVDVVLITGLDSQFMFSETIRVLHEEGLDVVNASYNVIQDAVFHSIHCHQDEKFANGAARISERLKKSIYESSYCAF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01768 180 Gene3D - 1 81 IPR036638 GO:0046983
Vian6g01768 180 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 58 IPR011598 GO:0046983
Vian6g01768 180 Coils Coil 48 75 - -
Vian6g01768 180 Pfam Helix-loop-helix DNA-binding domain 9 59 IPR011598 GO:0046983
Vian6g01768 180 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 8 73 IPR036638 GO:0046983
Vian6g01768 180 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01768 Vian-Chr6 35154398 35155324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01768 3 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.989 2.25e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian6g01768 HLH 7.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01768 - - gmx:100784418 272.322