Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01761 ATGTCGGGTAACTGTGAGAAAATGGTAGTCATCCCTCCAACGACCAACCAATGGCCACAGGTGGATGATCGGAAGGTCTTGATGGGTTCCTTCGGTGGAAGTAACAATAGTAAGGTAATGGAAAAACCAGATCAAGAGCTTGTGCAGCAGCAGCTGCAACAACAAACCCTCAAGTGCCCTCGTTGTGACTCATCAAACACTAAATTCTGCTACTACAACAATTACAGTTTGTCTCAGCCACGACACTTCTGCAAAGCCTGCAAGCGCTACTGGACAAGAGGTGGAACCCTCAGGAACGTTCCTGTTGGTGGTGGGTGCAGAAAAAACAAGCGTGTTAAGCGTCCAATGACAAACTCTTCTTCTGCTGCCATTGACACTGCTTCTTCTTCTAATTCTTCTTCTGCTCTCACCGCCGCTTCGCAACCACAGATCGACACTGCTTCAACCTCGAATCACATCAACCCTTTGTTTTATGGGTTGCCTAGTTGCTCCAGCGATGTGAATCTTCCGCTGTTCCCTAGGTTTGGCTCCAGAATCTCCAGTTCCGGGTTTGATCTTCAGCTGAATAATGCCCTTGGATTAGGTTTTTCATCCGGGGTTGTGTCCAATGAACCTAGTGAGAATAATAGCTTTAGAAACGGGTTTGGTTCTAATAACGCGCTTCTTTCAAGTTATAATTCCATCTTTGGTTCTTCTTCAAGTTCTACATCCACTGCTCCAGCTTTGTCTTCACTGTTGAGCTCTACTTTGCTTCAACAGAAGTTTATCGGCAGTGGGTTGAAAGATGGTGCTGATAGCAACACTTTCCAGCATGGCTTAGGCTTAACTCCACTAGAGCAGTTGCAAATGCCGAGTGATAACAGTGAGGCAGGGATGGTGTCTTTAAAAGATGTGAAAGTAGAATTAGGACAAAACAGCAGGTTGGAGTGGAATGGTGCTTGTCAAAACCAGATCCAGCATGTGGGCATGTACGATCCTTCGCTTTATTGGAATAATTCAGCAACAGCTTTGGGTGTTTGGAACGATCAAGCTGCGAATATCGGTTCTTAA 1050 0.4562 MSGNCEKMVVIPPTTNQWPQVDDRKVLMGSFGGSNNSKVMEKPDQELVQQQLQQQTLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPMTNSSSAAIDTASSSNSSSALTAASQPQIDTASTSNHINPLFYGLPSCSSDVNLPLFPRFGSRISSSGFDLQLNNALGLGFSSGVVSNEPSENNSFRNGFGSNNALLSSYNSIFGSSSSSTSTAPALSSLLSSTLLQQKFIGSGLKDGADSNTFQHGLGLTPLEQLQMPSDNSEAGMVSLKDVKVELGQNSRLEWNGACQNQIQHVGMYDPSLYWNNSATALGVWNDQAANIGS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01761 349 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Vian6g01761 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 46 230 IPR045174 GO:0003700|GO:0006355
Vian6g01761 349 MobiDBLite consensus disorder prediction 106 143 - -
Vian6g01761 349 Pfam Dof domain, zinc finger 55 111 IPR003851 GO:0003677|GO:0006355
Vian6g01761 349 MobiDBLite consensus disorder prediction 115 143 - -
Vian6g01761 349 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01761 Vian-Chr6 35079049 35080309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01761 1 349 C2C2-Dof Transcription Factor Family AT1G28310 38.919 1.25e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian6g01761 zf-Dof 2.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01761 - - gmx:778098 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01761 6 35079049 35080309 Vian6g01761 6 35079049 35080309 ECH