Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01760 ATGGATGAAAGCTGGAGTGAGGGGAAAAGGAGAATGAATTATAAGGAGGAAGAAGATGATGATTATGAGGAGGAGGAAGAGGAGGAGGGAAGTGAGTACGGAGAGGACGGTAGGAAGAAGAGGGTGGTCACTAACAAGAGAGGCTCCAAAGCTGGAGGCTCAATGCCACCTTCATGTCAAGTTGATGGTTGTAATGCTGATCTCAGTGATGCCAAGCCCTACCACAGGCGTCACAAGGTTTGTGAGTACCATGCCAAGGCTCCTGCAGTTCTCATTGCAGAGCAGCATCAACGGTTTTGCCAACAATGCAGTAGAACTGCTTATGTGTATACCCTTTGCCCTTTCCAACCAACCCTAGCCAGAGACAAAACTCTTAGCATAGAGCTTATGGAGAACGTTAACTGA 405 0.4765 MDESWSEGKRRMNYKEEEDDDYEEEEEEEGSEYGEDGRKKRVVTNKRGSKAGGSMPPSCQVDGCNADLSDAKPYHRRHKVCEYHAKAPAVLIAEQHQRFCQQCSRTAYVYTLCPFQPTLARDKTLSIELMENVN 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01760 134 ProSiteProfiles Zinc finger SBP-type profile. 56 133 IPR004333 GO:0003677
Vian6g01760 134 Pfam SBP domain 59 106 IPR004333 GO:0003677
Vian6g01760 134 SUPERFAMILY SBT domain 57 109 IPR036893 GO:0003677|GO:0005634
Vian6g01760 134 MobiDBLite consensus disorder prediction 1 17 - -
Vian6g01760 134 Gene3D - 49 123 IPR036893 GO:0003677|GO:0005634
Vian6g01760 134 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 105 IPR044817 GO:0003677
Vian6g01760 134 MobiDBLite consensus disorder prediction 18 32 - -
Vian6g01760 134 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01760 Vian-Chr6 35056607 35057182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01760 59 105 SBP-box Gene Family AT2G33810 70.213 1.46e-20 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vian6g01760 SBP 2.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01760 - - vra:106775516 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01760 6 35056607 35057182 Vian6g01760 6 35056607 35057182 ECH