Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01757 ATGTCTCTCCCTGACTCTCCTGTGCCCGATGATATCGAGACCGATCCATCCGAAGAAGAGGAAGAAGTCGAAGAAGAAACAGAGGAGGAGGACGAAGCTGAAGAAGTGGAAGAGGAGGAGATTGAGGAAGAAGTAGAGGAGGAAGATTTTGAAGAAGAGGTAGAGGAGGAAGAGGTCGAGGAAGTAGATGAGGAAGAAGTGGATGAGGAAGTAGAGGAGGAAGTGGAAGAGACGGAGTTAGAAGAAGAGGAAGACGAAGAGGGAGAGGGAGAACAAGAAGTAGAGGAAGAAGAGATAGAGGGAGAAGAAGAAGAAGAAGAAGAAGTAGAAGTTGAGGTAGAAGAAGAGGAAGAGGGAGAACAAGAATTAGAAGAAGGGGAGGAAGAAGTCCAAGAGAATGAAGGAGAAGAAGAGAAACAAGAACAAGAAGCACTGGAGGATAATAAAGAAGACCAACAACAGAAACAAAGAGAAGCAGTGGAGGAGAAGAAGGAAGAGCAACCACAACAACAAGAAGCAGCAGCGAAGGAGAAGAAGGAAGAGCAACGACAGCAACAAGAAGAAGCAGTGGAGGAGAAGAAGAAAGAGCAAGAACAGCAACAAGAAAAAGCTATGGAGGAGAAGAAGAAAGAACAACAATTGAAACAAGAAGCAATAAAAGAGAAAGAGGGACAACAAAAAGAAGCAGTAAGGGAGGACAGATTGGCGGTGACAGGTTCTCCATCCGATGCTGATTTGAGCCTACAAATGGAGTCTAAGGAACAAGACAAAAACTTGGGGCCAGATTATTCTGTGGCTGAAAACCCTGAAGTAATTCCACCATCTAGTGTGCATTGCATGGAAGAGACTGATGCCATGCTCAAAATATCTGTTCCTTCATGTGAGATACTGACATTGAGAAAGGAAGAGCTTCACCTGAAATATGACATTTCAAGTCATTCGAAATCTAGAGAAAATCTGACTAATGTTGAAAATTGTAGAAGTCAAGGACTAGAAGTTGATGTTGAAAATGCTGGATCCCTTCTACAGAAGGAAACACAGGGTGGATACAGTGAGTTAGGTTGCAATAGCAAGGCTAATTTATGTGATGATAATGATATTGATTCCAGGGTCAGGGCCACCAAGTCATCTAGTGATACTGGACAAGATATGGTCAATTGCCTGCTTCCAAAAGATTGTATTGTTGAGGATGCTAGTGGTGGTCAGAGTTCTAGGAACAATATCAAGCAGTTAGAGAGGGAGGAGTCAAGGGATGATATGAAGCAAACACTGTCAAGGACTAGAAGTATGTCTCCCAGTGCTGAAATTAAAAACACAAACAAACGACCAAAAATTATATGTGATTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATACTGTGGATAAGACAGATCAGGAGGCTGAAGCTGACTTAGTTACTGCTCATCAGAAGAGAAAATTGAAAGTGGAAGAAGGTGTTAAGGACAATGTTCAGAGAATAAGGATGAATGACCAAGAACAAACTCCTAGTTGGCATCCATCTCAAGAAAAACAGAACTTTATGCAGAGGGACAACTTGTTTCCAGAGAATAGATTTGCATTTAGTTCAACAAGCAATTATTTCAACCTAAATCAGGATGGAATGACTACTCTTCGGAACCAACATATATACAAAGGACATGCTTCCACTCTTTTGAACCATTCACCAAATTCAAGCCTGGTTACTCAATTTCCATCTTCAAGTATGTCACTCTCTCACCGGATTTCTTCTCAATCAGAATGCTCATTGCCTTTTAATTCATCTTTGGGGGCTGGTACCCAAAAGATTTTGAGCACTGATAAAGAATATCTCACATTTAAGTCCACTTTCTCTGGTTCAGGGCGGGAGGATTTTCGTCTAGTTAGTTCTTCCAGCGTTCCATCTTATCCCACTAGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTGCCCTTCCGGCCATCCTTTTTTATTACTCCCATGAATGTATCATCTCCTGGAGATCTTTATGATCCTCTTCGCGATAGCATTGAGATACCTAATATAGGGGATGGGTCTTTGAAGGCTTCCCTTTTAATTCAAGGATCTAACGTACTGGCTTCATCACAGGCTCCGATTTATGGTGATTCTGCTGTGATTGGGAAATACACGTCCAGTGTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAACTTTATGAAAATGAGCCAAACAAAAACTCTGTTCCTCATGAAAAGAATACTGAAACAGAGATAACGTCAGGAACTTGTGTAAACTATCAAAATGGTAAAATTGGCACAGGACAAAATACCTTAGGTGTTGCAGATAGTACAAAAAAGGAGAGAGAAATGACTGAGCATGATGCTAGACGACATGGTGAAGGATCAGGGCACAAAACAAAGAGAGGAGACAGGGATAAGAAAAATCATGAAATAGATGTTGACTTTCAGATGGATGGCAGCATGCAGAAGGAACCAAAGGCACTAAAAATGTTACGTGCAGCTCTTGTTGATCATGTAAAAGAGTTGTTAAAACCAGTTTGGCATGAGGGTCGTCTTAGCAAGGATGCACATATTATGATAGTCAGAAAATCAGTTGACAAGGTTGTTAGCACCATAGAGCCCCATCAGATTGCTACCATAGATACTGCCAAGCAATATGTTTCTTCAAGTCGGGCAAAAATTGCAAAGCTGGTCAATGGATATGTCAACAAATATGGCAAATCTTGA 2769 0.4074 MSLPDSPVPDDIETDPSEEEEEVEEETEEEDEAEEVEEEEIEEEVEEEDFEEEVEEEEVEEVDEEEVDEEVEEEVEETELEEEEDEEGEGEQEVEEEEIEGEEEEEEEVEVEVEEEEEGEQELEEGEEEVQENEGEEEKQEQEALEDNKEDQQQKQREAVEEKKEEQPQQQEAAAKEKKEEQRQQQEEAVEEKKKEQEQQQEKAMEEKKKEQQLKQEAIKEKEGQQKEAVREDRLAVTGSPSDADLSLQMESKEQDKNLGPDYSVAENPEVIPPSSVHCMEETDAMLKISVPSCEILTLRKEELHLKYDISSHSKSRENLTNVENCRSQGLEVDVENAGSLLQKETQGGYSELGCNSKANLCDDNDIDSRVRATKSSSDTGQDMVNCLLPKDCIVEDASGGQSSRNNIKQLEREESRDDMKQTLSRTRSMSPSAEIKNTNKRPKIICDFFAKGWCIRGSSCSFLHIKDTVDKTDQEAEADLVTAHQKRKLKVEEGVKDNVQRIRMNDQEQTPSWHPSQEKQNFMQRDNLFPENRFAFSSTSNYFNLNQDGMTTLRNQHIYKGHASTLLNHSPNSSLVTQFPSSSMSLSHRISSQSECSLPFNSSLGAGTQKILSTDKEYLTFKSTFSGSGREDFRLVSSSSVPSYPTRYKSKICSYDWEPSVPFRPSFFITPMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIQGSNVLASSQAPIYGDSAVIGKYTSSVNDDKSSVSSHNKLYENEPNKNSVPHEKNTETEITSGTCVNYQNGKIGTGQNTLGVADSTKKEREMTEHDARRHGEGSGHKTKRGDRDKKNHEIDVDFQMDGSMQKEPKALKMLRAALVDHVKELLKPVWHEGRLSKDAHIMIVRKSVDKVVSTIEPHQIATIDTAKQYVSSSRAKIAKLVNGYVNKYGKS 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01757 922 MobiDBLite consensus disorder prediction 11 144 - -
Vian6g01757 922 Coils Coil 19 228 - -
Vian6g01757 922 MobiDBLite consensus disorder prediction 398 435 - -
Vian6g01757 922 MobiDBLite consensus disorder prediction 408 424 - -
Vian6g01757 922 MobiDBLite consensus disorder prediction 731 760 - -
Vian6g01757 922 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 176 921 - -
Vian6g01757 922 MobiDBLite consensus disorder prediction 1 248 - -
Vian6g01757 922 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 446 465 IPR000571 GO:0046872
Vian6g01757 922 ProSiteProfiles Zinc finger C3H1-type profile. 441 468 IPR000571 GO:0046872
Vian6g01757 922 MobiDBLite consensus disorder prediction 731 750 - -
Vian6g01757 922 SMART c3hfinal6 442 467 IPR000571 GO:0046872
Vian6g01757 922 MobiDBLite consensus disorder prediction 778 823 - -
Vian6g01757 922 MobiDBLite consensus disorder prediction 789 823 - -
Vian6g01757 922 Gene3D - 433 521 - -
Vian6g01757 922 MobiDBLite consensus disorder prediction 145 234 - -
Vian6g01757 922 SUPERFAMILY CCCH zinc finger 441 465 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01757 Vian-Chr6 35010310 35015771 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian6g01757 zf-CCCH 8.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01757 - - vra:106775763 1315.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01757 6 35010310 35015771 Vian6g01757 6 35010310 35015771 ECH