Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01753 ATGGCGCCCAGGGACAAGACCACTGCCGTTAAGGTTAACACTAACGCTAACGCCGCCGGAGTCAAGGAGGTGCATTTTCGGGGAGTCAGGAAGAGGCCGTGGGGAAGATACGCCGCCGAGATCAGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTAGGCACCTTCGACACGGCGGAGGAGGCGGCGCGTGCCTACGACGCCGCTGCTCGGGAGTTTCGCGGCCCCAAGGCCAAGACCAATTTCCCTCCTCCGTCCGATAGTAATGTCAAGAACGCCAGCCCTAGCCAGAGCAGCACCGTCGAGTCTTCCAGTCGCGACCGCGATGTCGCCGCCGATTCCTCCCCTCTGGACCTCAACCTTGCCCCGGCCGCCGTCTCCGCTGCCCGCTTCCCCTTCCAGCACCAGTTCTCCGTTTTTCCGGCGGCGGCCAACCAGGTTATGTACTTCGACGCTGTCATACGCGCCGGTTTGGGCGGCCCGCGTGGGTTTGGATTTGGCTACAATCAGCATCCCGTTGTGGCGAGCGAGTTCCACGCGACGACCAGCGACTCGGACTCGTCCTCCGTGATCGATCTGAACCACAACGAAGGCGATATGAAGGGGAGCGGTTCCAGAATTTTCGATCTCGACCTTAATAACCCTCCTCCACAGGAGATGGCCTGA 663 0.6139 MAPRDKTTAVKVNTNANAAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPPPSDSNVKNASPSQSSTVESSSRDRDVAADSSPLDLNLAPAAVSAARFPFQHQFSVFPAAANQVMYFDAVIRAGLGGPRGFGFGYNQHPVVASEFHATTSDSDSSSVIDLNHNEGDMKGSGSRIFDLDLNNPPPQEMA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01753 220 MobiDBLite consensus disorder prediction 200 220 - -
Vian6g01753 220 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677
Vian6g01753 220 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Vian6g01753 220 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Vian6g01753 220 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Vian6g01753 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 179 - -
Vian6g01753 220 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Vian6g01753 220 MobiDBLite consensus disorder prediction 81 104 - -
Vian6g01753 220 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Vian6g01753 220 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Vian6g01753 220 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Vian6g01753 220 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Vian6g01753 220 MobiDBLite consensus disorder prediction 73 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01753 Vian-Chr6 34976500 34977162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01753 22 104 AP2-EREBP Transcription Factor Family AT5G44210 75.904 3.19e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian6g01753 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01753 K09286 - gmx:100170742 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01753 6 34976500 34977162 Vian6g01753 6 34976500 34977162 ECH
Vian11g01052 11 14649919 14651816 Vian6g01753 6 34976500 34977162 ECH