Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01740 ATGTCCCTGCTTCCTCTGTTCTTCCTCTTCACCGTGCTTCTCCTCCAAAATCACTTTTTCATCTCTGCTCTCAACCAAGACGGTTTATATCTGTACCAGTGGAAGCAATCCCTCGACGACCCTGACTTGTCTCTGGCGTCCTGGAACAACCGCGACACCACCCCATGCAACTGGGCCGGCGTCACATGCGGCCCAAATAGCAGCGCCGTCACTTCACTCGACCTCTCCAACTTCAACGTTGCAGGCCCATTCTCCGCCAACTTCCTCTGCCGCCTCCCCAACCTCACCTCCATCATCCTCTTCAACAACTCCATCAACCAAACCCTCCCTCTCCAAATATCCCTCTGCACCCCTCTCCTCCACCTTGACCTTTCCCAGAACCTCCTCACCGGCACCCTCCCCCATACACTCCCCCTCCTCCCCAGCCTCCGCTACCTTGACCTCACCGGCAACAACTTCTCCGGCCCCGTTCCCCCCTCCTTTGGAACCTTCCAGAACCTCCAAACCCTCTCCCTCGTATTCAACCTCCTTGACGACGTCTTTCCGCCTTCTCTCTTCAATATCACCTCCCTTAAAACTCTCAACCTCTCCTATAACCCCTTCCACCCTTCCCCCATTCCTCACTCCATCGGCAACCTCACCAATCTAGAGACGCTCTGGCTCAGCGCTTGCAATCTCGTGGGCCCCATTCCCGACTCCGTCGGGAACCTCAGAAACCTTCGCGTCTTGGATTTGACCTTCAACAACCTCTATGGACCCATCCCTAGTTCGCTCACTCGCATCACCACTGTCAAGCAGATTGAGTTGTACAACAACTCGCTCTCCGGCGAATTGCCTAGAGGAATCTCCAACCTCACTTCGTTGCGGCTCTTTGATGTTTCCATGAACCATTTGAGTGGGAGCATTCCTGATGAGCTGTGTCGTCTGCCTCTCGAGAGTCTCAACCTCTATGAGAACGGTTTCACCGGGGAGTTGCCGCCCAGTATTGCTAACTCGCCCAACCTTTATGAGCTGAGGTTGTTCGGGAACAAACTCACCGGGTCATTGCCGGACAATTTAGGGAAGTCCGGTCCTTTGAGATGGCTTGACGTTTCCACCAACCGTTTCTTCGGTGGGATTCCGGCGAGCCTCTGTGATCACGGCGAGTTGGAGGAGATGTTGATGCTCGGGAACCAGTTCTCCGGGGAGATACCGGCGAGTTTGGGCTCGTGTCGGAGCTTGGCGCGTGTGAGGTTGGGTACGAACCGGTTGTCCGGCGAGGTTCCGGCGGGTATGTGGGGCCTTCCGCATGTGTATTTGCTTGAACTGATGGGTAACTCGTTTAGTGGCTCGATTGCGAGGACCATTGGTGGGGCGAGGAATTTGTCGTCGTTGATTCTGACGAAGAACAATTTCTCGGGTGTGATCCCCGAGGAGATTGGGTGGTTGGAAAATCTTCAAGAGTTTTCTGGTGGTGATAACAGGCTCAGTGGGTCGTTGCCTGGGAGTATTGTGAATCTCGGGCAGCTTGGCACTCTTGATCTTCATAACAATATGTTATCCGGGGAGCTCCCCAAGGAGATTCAGTCGTGGAAGAAACTGAATGACTTGAATTTGGCTAATAATGAGATTGGTGGGGTGATTCCTGATGGAATAGGCAGTTTGGCTGTGTTGAATTTTCTTGATCTTTCCAACAATCAATTCTCGGGGAATGTTCCTACGGCGTTGCAGAATTTGAAGCTCAATCAGCTCAATCTGTCTTATAATAAGCTTACTGGAAAGCTACCCCCACTGCTGGCCAAGGATATGTACAGGGCTAGTTTTATTGGCAATCCTGGCTTGTGCGAGGATTTCAAAGGTTTGTGTGATGGCAAAAATGGGGATAAGGGTAAGGGTTTTGTGTGGATTCTGCGAGCTATTTTTATAGTTGCCACTTTGGTGTTTGTCATCGGTGTTGTCTGGTTTTACTTAAGGTACAAGAATTTCAAGAATGCTGAGAGATCTGTTGATAAATCAAAGTGGACTTTGATGTCGTTTCATAAACTGGGTTTCAGCGAAGATGAGATCTTGAATTGCCTGGATGAAGATAATGTGATAGGAAGTGGGTCTTCCGGTAAGGTTTACAAGGTTGTGTTGACCAGCGGGGAAGTGGTTGCTGTGAAGAAGATATGGGGCGGCGTCAAGAAGGATATAGACAGCGGAGATGTGGAGAGGGGTCAATTTCATCAAGACAGTGCTTTTGACGCAGAGGTTGAAACTTTGGGCAAAATTAGGCACAAGAACATTGTCAAACTGTGGTGTTGCTGCACTACTAGGGATAGCAAGCTATTGGTTTATGAGTATATGCCGAATGGTAGCCTGGGTGATTTACTGCATAGCAATAAAGGAGGGTTGTTGGACTGGCCAACTAGGTATAAGATAGCTGTTGATGCTGCAGAAGGCCTCTCTTATTTGCATCACGACTGTGTTCCTTCAATTGTTCATAGAGATGTGAAATCTAATAACATCTTGTTAGATGGGGACTTCGGTGCAAGGGTGGCAGATTTTGGAGTAGCTAAGGTAGTTGATGCCACCGGGAAAGGAACTAAATCCATGTCTGTTATAGCTGGGTCTTGTGGATACATAGCACCAGAATATGCATACACACTCAGAGTTAATGAGAAGAGTGATATATATAGCTTTGGTGTTGTCGTACTTGAGTTGGTTACGGGAAGGAGACCCATTGACCCTGAATTTGGGGAAAAAGACTTGGTTATGTGGGCGTGCACCACCTTGGACCAGAAAGGCGTGGAGCATGTGATTGACTCGAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCCTCAACATTGGCCTCATGTGCACCAGTCCTCTTCCAATCAACCGGCCTGCGATGAGAAGAGTGGTGAAGATGTTACAAGAGGTGGGCATAGAGAACCTAACGAAACCAGCCAAGAAAGATGGAAAGTTGTCCCCATATTACTATGACGATGGGTCTGATCATGGAAGTCTTGCTTAG 3003 0.4942 MSLLPLFFLFTVLLLQNHFFISALNQDGLYLYQWKQSLDDPDLSLASWNNRDTTPCNWAGVTCGPNSSAVTSLDLSNFNVAGPFSANFLCRLPNLTSIILFNNSINQTLPLQISLCTPLLHLDLSQNLLTGTLPHTLPLLPSLRYLDLTGNNFSGPVPPSFGTFQNLQTLSLVFNLLDDVFPPSLFNITSLKTLNLSYNPFHPSPIPHSIGNLTNLETLWLSACNLVGPIPDSVGNLRNLRVLDLTFNNLYGPIPSSLTRITTVKQIELYNNSLSGELPRGISNLTSLRLFDVSMNHLSGSIPDELCRLPLESLNLYENGFTGELPPSIANSPNLYELRLFGNKLTGSLPDNLGKSGPLRWLDVSTNRFFGGIPASLCDHGELEEMLMLGNQFSGEIPASLGSCRSLARVRLGTNRLSGEVPAGMWGLPHVYLLELMGNSFSGSIARTIGGARNLSSLILTKNNFSGVIPEEIGWLENLQEFSGGDNRLSGSLPGSIVNLGQLGTLDLHNNMLSGELPKEIQSWKKLNDLNLANNEIGGVIPDGIGSLAVLNFLDLSNNQFSGNVPTALQNLKLNQLNLSYNKLTGKLPPLLAKDMYRASFIGNPGLCEDFKGLCDGKNGDKGKGFVWILRAIFIVATLVFVIGVVWFYLRYKNFKNAERSVDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLTSGEVVAVKKIWGGVKKDIDSGDVERGQFHQDSAFDAEVETLGKIRHKNIVKLWCCCTTRDSKLLVYEYMPNGSLGDLLHSNKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPSIVHRDVKSNNILLDGDFGARVADFGVAKVVDATGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVVLELVTGRRPIDPEFGEKDLVMWACTTLDQKGVEHVIDSRLDSCFKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLQEVGIENLTKPAKKDGKLSPYYYDDGSDHGSLA 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01740 1000 SUPERFAMILY L domain-like 311 608 - -
Vian6g01740 1000 FunFam Leucine-rich receptor-like protein kinase family protein 206 304 - -
Vian6g01740 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Vian6g01740 1000 Gene3D Ribonuclease Inhibitor 205 311 IPR032675 -
Vian6g01740 1000 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 233 969 - -
Vian6g01740 1000 Pfam Leucine rich repeat 93 153 IPR001611 GO:0005515
Vian6g01740 1000 Gene3D Ribonuclease Inhibitor 24 204 IPR032675 -
Vian6g01740 1000 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 775 984 - -
Vian6g01740 1000 SMART LRR_typ_2 548 571 IPR003591 -
Vian6g01740 1000 SMART LRR_typ_2 285 309 IPR003591 -
Vian6g01740 1000 SMART LRR_typ_2 500 523 IPR003591 -
Vian6g01740 1000 SMART LRR_typ_2 188 213 IPR003591 -
Vian6g01740 1000 SMART LRR_typ_2 140 166 IPR003591 -
Vian6g01740 1000 SMART LRR_typ_2 237 261 IPR003591 -
Vian6g01740 1000 SMART LRR_typ_2 92 116 IPR003591 -
Vian6g01740 1000 Gene3D Transferase(Phosphotransferase) domain 1 775 985 - -
Vian6g01740 1000 SMART serkin_6 686 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01740 1000 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 24 188 - -
Vian6g01740 1000 Gene3D Ribonuclease Inhibitor 312 617 IPR032675 -
Vian6g01740 1000 Pfam Leucine Rich Repeat 190 213 IPR001611 GO:0005515
Vian6g01740 1000 FunFam Receptor-like protein kinase HSL1 310 617 - -
Vian6g01740 1000 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Vian6g01740 1000 SUPERFAMILY Protein kinase-like (PK-like) 681 968 IPR011009 -
Vian6g01740 1000 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Vian6g01740 1000 Gene3D Phosphorylase Kinase; domain 1 670 774 - -
Vian6g01740 1000 FunFam Receptor-like protein kinase HSL1 670 774 - -
Vian6g01740 1000 ProSiteProfiles Protein kinase domain profile. 686 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01740 1000 SUPERFAMILY RNI-like 72 379 - -
Vian6g01740 1000 Pfam Protein kinase domain 688 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01740 Vian-Chr6 34858257 34861619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01740 21 1000 Receptor kinase-like Gene Family AT1G28440 67.748 0.0 1354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian6g01740 Pkinase 4.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01740 - - gmx:100776936 1761.12