Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01732 ATGGATGTTGAAGAGTTGTTTCAGGCTCAGGCTCATTTGTACAAGTATACTTACAGTTTTGTTGCTTCCATGTGCCTCAAAAGTGCAGTTAACTTGGGAATACCAGACGCAATCTTCAAGAATGGCAAACCTATTACTCTCTCTGAGTTGGTCTTGGCACTTCAGATTCAACCAACAAAATCTGGTCATGTATATAGACTCATGCGCTTGCTGGCGCATGCTGGCTTCTTTGCAACAACCAAGGTTGTGAAAGATGATAAAGAAGAAGTGGGGTATGATCTCACACCTTCTTCAAGGCTACTCCTTAAAGACAACGTTCCAACCTTGTCTCCTTTTGTTCGAGCAATGTTTCATCCAGCTATAGTTCACTCATCGGAATCATTGCCAGAGTGGTTTCACAGAAATGAGACCACACCCTGTGACACTGCGTTTGGGATGAGTTTCTGGGAGTATTTGAGTCAAAACCAAGAGTTTAACGGCCTCTTCAATGAAGCAATGGTCAGTGATTCCGGGATGGTGAATTTGGTTATGAAAAACTGTAAATCTGTTTTTGAGGGACTGAATTCCTTGGTTGATGTTGGTGGCGGTAAAGGAGGTGTGGGTAGGATCGTTTGTGAGTCACTGCCTAATTTGCAATGGACCGTGCTTGATCTTCCACATGTTGTCGAAAATTTGCCTGACAGTACCAATTTGAAGTTTGTTGGAGGTGACATGTTTCAGTCCATTCCTCCAGCAGATGCGGTTCTTCTCAAGTTAGTGTTGCATGCTTATAGTGATGAAGAATGCATTAAGGTACTGAAGAAATGCAAAGAAGCTGTTTCAAAGAAGGGGAAGACAGGGAAAGTAATTATCATAGACATAGTAGTTGGTCAAAAGAATGAAAATCATGAATTAACAGAAGCAAAGCTGTTTTTTGATATGATTATGATGGTTGTGGTCACGGGGAGAGAGAGAGAAGAAAAAGAATGGGAGAAACTCTTCTTGGAAGCTGGATTCAGTCATTACAAGATAACAAACATCTTTGACTTGTCAGCTAAGAAGTGTGCACCCTGCAATACAAAGGACTTGCAGCCCATGACCCAGGATGAAGCACGCACTCTGCTTCCACAGGTTGCCGATTGGGATTTGGTAAACGAGGATGGTGTATTGAAATTGAGGAGATCATGGAAAGTGAAGACTTTTACCAAAGGATTGGAATTTTTCAGGATAATAGGTGATCTTGCTGAAGCTGAAGGTCATCATCCTGATCTTCATCTTGTTGGCTGGAATAATGTTACCATAGAGATTTGGACACATTCCGTGGGTGGGCTGACCCAGAATGATTTTATTCTCGCTGCTAAGATGAATGGACTTAATTTGCATGGCTTGGTTAGACGGAAGGCTCCCGACTGA 1392 0.4231 MDVEELFQAQAHLYKYTYSFVASMCLKSAVNLGIPDAIFKNGKPITLSELVLALQIQPTKSGHVYRLMRLLAHAGFFATTKVVKDDKEEVGYDLTPSSRLLLKDNVPTLSPFVRAMFHPAIVHSSESLPEWFHRNETTPCDTAFGMSFWEYLSQNQEFNGLFNEAMVSDSGMVNLVMKNCKSVFEGLNSLVDVGGGKGGVGRIVCESLPNLQWTVLDLPHVVENLPDSTNLKFVGGDMFQSIPPADAVLLKLVLHAYSDEECIKVLKKCKEAVSKKGKTGKVIIIDIVVGQKNENHELTEAKLFFDMIMMVVVTGREREEKEWEKLFLEAGFSHYKITNIFDLSAKKCAPCNTKDLQPMTQDEARTLLPQVADWDLVNEDGVLKLRRSWKVKTFTKGLEFFRIIGDLAEAEGHHPDLHLVGWNNVTIEIWTHSVGGLTQNDFILAAKMNGLNLHGLVRRKAPD 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01732 463 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 341 IPR029063 -
Vian6g01732 463 SUPERFAMILY PCD-like 357 451 IPR036428 GO:0006729|GO:0008124
Vian6g01732 463 FunFam O-methyltransferase ZRP4 103 346 - -
Vian6g01732 463 Pfam O-methyltransferase domain 131 333 IPR001077 GO:0008171
Vian6g01732 463 Gene3D Vaccinia Virus protein VP39 102 345 IPR029063 -
Vian6g01732 463 SUPERFAMILY "Winged helix" DNA-binding domain 4 105 IPR036390 -
Vian6g01732 463 Gene3D Transcriptional coactivator/pterin dehydratase 358 454 IPR036428 GO:0006729|GO:0008124
Vian6g01732 463 Gene3D - 1 101 IPR036388 -
Vian6g01732 463 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 14 354 IPR016461 GO:0008168
Vian6g01732 463 Pfam Pterin 4 alpha carbinolamine dehydratase 358 449 IPR001533 GO:0006729|GO:0008124
Vian6g01732 463 Pfam Dimerisation domain 24 72 IPR012967 GO:0046983
Vian6g01732 463 FunFam Coniferyl alcohol 9-O-methyltransferase 1 101 - -
Vian6g01732 463 PANTHER O-METHYLTRANSFERASE 6 336 IPR016461 GO:0008168
Vian6g01732 463 CDD PCD_DCoH_subfamily_a 373 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01732 Vian-Chr6 34772188 34778048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01732 21 337 Monolignol Biosynthesis Gene Families AT5G54160 32.308 8.54e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01732 K22588 - qsu:112018723 448.743