Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01729 ATGGGGAAAAGGAAGGCAAAGGCAAAGCCTGCTCCAAAGAAAAGAATGGATAAGCTTGATACTGTCTTCAGCTGCCCTTTCTGCAATCATGGCAGCAGTGTTGAATGCCGCATTGACATGAAGAATTTGATCGGGGAAGCTACTTGTGGAATATGCCAAGAGAGCTTTAGCACTACCATCACAGCTTTATCAGAGCCAATAGACATATACAGTGAGTGGATTGATGAATGTGAAAGGGTGAACACTGTGGATGATGATGCTTAG 264 0.4394 MGKRKAKAKPAPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEATCGICQESFSTTITALSEPIDIYSEWIDECERVNTVDDDA 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01729 87 Gene3D - 16 82 IPR038567 -
Vian6g01729 87 PANTHER UNCHARACTERIZED 1 84 IPR007808 -
Vian6g01729 87 SUPERFAMILY Zinc beta-ribbon 1 81 - -
Vian6g01729 87 FunFam Transcription elongation factor 1 homolog 15 82 - -
Vian6g01729 87 Pfam Transcription elongation factor Elf1 like 2 78 IPR007808 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian6g01729 Elf1 3.3e-31 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01729 K25829 - nnu:104599505 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01729 6 34750904 34755446 Vian6g01729 6 34750904 34755446 ECH