Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01723 ATGGACCAACGACATAAAGTGATTCTTCTTCAGCTGCTTCTTTTCCAAGTTCTGCTTGTTGCATCACAGACAGACAGTCGGGATTATTCTGCACTAAATTCCCTTACACAATCCTGGAGTAACAAGCCACAAAGTTGGGTGGGTCAAGATCCTTGCAGTGGCTGGGATGGAATTCGTTGCAGCAATACAAGAATTACCCAATTGAGAGTTCCAGGCTTGAATATTGGTGGCCAACTGTCTTCGGCAATTGAGTCTTTATCCGAACTAGATACTCTGGATCTTTCTTACAACACGGGTTTGACAGGAACAATTCCAGAAGCAATTGGGAATATGAAAAACCTAAAATCCCTATCATTGGTTGGTTGTGGTTTCTCTGGTCCGATTCCGGATTCAATAGGGTCTCTAACGCAGCTGACCTTTCTAGCATTGAACTCTAACAGGTTCAGTGGAAATATACCACGCTCTCTTGGCAATCTAACAAATATCAATTGGCTTGATCTTGCTGAAAACGAGCTTGAAGGGACTATCCCTGTCTCTGATGACCAAGGACGACCAGGCCTTGACCTGCTCCTTAAGGCACAACACTTTCATATGGGGAGCAATAAGCTCTCTGGTACAATACCAGAAAAACTTTTCAACTCCAGTATGATTCTGGAACACGTGCTTTTTGACCACAATCAACTAGAGGGCAGTGTTCCTAGTTCCATTAGTTCTGTGGGGACATTGGAAGTTCTGCGCTTAGACAAGAATGGATTAACAGGGGGCGTGCCGGCAAACTTAAACAGACTCGGAAAACTAAGCGAAATCTATTTATCTCACAATAAGCTAAATGGAAGTCTGCCTGATTTTACTGGAATGAATAGTCTCACATACGTGGACATGAGCGACAATGCTTTCAATGCCTCTAATGTACCTTCATGGGTTTCAAGTCTGCCAGAACTGACAACAGTGATACTTGGGCAGAACCAGCTCGGTGGCATGCTAAATCTCAGTAGCTATACCAAAAGTCTGCAACTCATAAATTTGGAGAGTAATGAAATAACAGAGATTGAACCGCGAAACAATCTACCAAGTTTTGAAATAAGACTAGCTAACAACCCAGTTTGTCGTGAAAGTGGATCTTCTGAGAATAGTTACTGCAAAGAAGCAGTACAAAATCCCTCGTCTTATTCAACACCACCAAATAATTGTTCTCCTCCACCTTGCAGTTCTGATCAGATTGCCAGCCCAAATTGTATATGTGCATATCCCTATACTGGACTTCTTATATCGAGAGCTCTTAGTTTCTCAAACTTCAGTGACGCAAGTTACTATAGGGAGCTTGAGCAGTCTCTGATGGATACTTTCCGAAACCAAAGCATTCCAGTGGATTCAGTTGCTCTTAGTAACCCCATGAGAAATTCTACTTCTGATAACTTTGAATTGACTCTTCAATGCTTCCCCTCGCAAAGCGATCGTTTCAATTCAACTGGAGTTTTAACCATTGCTTTTCTGCTTAGTAACCAAATTTATAAGCCCCCAGAGTTCTTCTCCCCATACATCTTCAAGGGTGCTAATTATGATTACACAGGAGGAGAACCAAATGGATCAAAGTCATCACATACCGGGGTTATTGTTGGTGCTGTAGTTGCTGTTGTGGTCTTTATTGTACTGGCATCCCTTGCAGGGATGTATGCCATTCGCCAGAAAAGAAGAGCAGAAAGATCTGCAGGGTTGAACCCTTTTGCTAATTGGGATCAGAATAAGAATAGTGGCACTGCTCCTCAGTTGAAAGGAGGACGATGGTTTTCTTTTGATGACCTAAGGAAGTACACCAACAACTTCTCAGAAACCAATACTATTGGATCTGGAGGCTATGGACAGGTTTACCAAGGAACACTTCCCTCTGGGGAGTTGGTTGCTATCAAACGGGCTGCAAAAGAATCTATGCAGGGTGCTGTTGAGTTTAAAACCGAGATTGAACTTCTATCAAGGGTCCATCACAAGAATCTCGTTAGTCTTGTGGGTTTCTGTTTTGAGAAGGGTGAACAAATGCTGGTGTATGAGTACATTCCCAATGGCACTTTAATGGATAGTCTCTCAGGAAAGTCTGGGATCTGGATGGATTGGATAAGGAGACTTAAAGTAGCATTAGGTGCAGCCAGGGGTCTAGCTTATCTTCATGAACTTGCTAACCCACCAATCATACACAGGGACATCAAATCTAGCAATATCTTACTTGATCATCACCTCAATGCAAAAGTTGCTGATTTTGGTCTCTCCAAACTTCTTGTTGATAGTGAAAGGGGCCATGTCACTACTCAAGTCAAAGGGACAATGGGATACTTGGATCCTGAATATTACATGACCCAGCAGTTGACAGAAAAGAGTGATGTATATAGCTACGGAGTGCTAATGCTGGAACTAGCAACAGCAAGAAGGCCAATAGAGCAAGGAAAGTATATTGTAAGAGAAGTAATGAGGGTAATGGACACTTCAAAAGATTTATACAACCTTCATTCCATTCTAGATCCAACCATAATGAAAACAAAACCAAAAGGTTTGGAAAAGTTTGTAACGTTGGCAATGAGGTGTGTCAAAGAATATGCAGCTGAGAGGCCTACAATGGCTGAGGTTGTAAAAGAGATTGAGAGCATAATCGAGCTTGTTGGATTGAACCCGAATTCTGAATCAGCTACAACATCAGAAACTTACGAGGAAGCAGGTGGAGGAAATGCCCAACATCCTTACAGGGAAGAAGATTTTAGCTATAGTGGAATGTTTCCATCAACAAGGGTAGAACCTCAATAG 2790 0.4222 MDQRHKVILLQLLLFQVLLVASQTDSRDYSALNSLTQSWSNKPQSWVGQDPCSGWDGIRCSNTRITQLRVPGLNIGGQLSSAIESLSELDTLDLSYNTGLTGTIPEAIGNMKNLKSLSLVGCGFSGPIPDSIGSLTQLTFLALNSNRFSGNIPRSLGNLTNINWLDLAENELEGTIPVSDDQGRPGLDLLLKAQHFHMGSNKLSGTIPEKLFNSSMILEHVLFDHNQLEGSVPSSISSVGTLEVLRLDKNGLTGGVPANLNRLGKLSEIYLSHNKLNGSLPDFTGMNSLTYVDMSDNAFNASNVPSWVSSLPELTTVILGQNQLGGMLNLSSYTKSLQLINLESNEITEIEPRNNLPSFEIRLANNPVCRESGSSENSYCKEAVQNPSSYSTPPNNCSPPPCSSDQIASPNCICAYPYTGLLISRALSFSNFSDASYYRELEQSLMDTFRNQSIPVDSVALSNPMRNSTSDNFELTLQCFPSQSDRFNSTGVLTIAFLLSNQIYKPPEFFSPYIFKGANYDYTGGEPNGSKSSHTGVIVGAVVAVVVFIVLASLAGMYAIRQKRRAERSAGLNPFANWDQNKNSGTAPQLKGGRWFSFDDLRKYTNNFSETNTIGSGGYGQVYQGTLPSGELVAIKRAAKESMQGAVEFKTEIELLSRVHHKNLVSLVGFCFEKGEQMLVYEYIPNGTLMDSLSGKSGIWMDWIRRLKVALGAARGLAYLHELANPPIIHRDIKSSNILLDHHLNAKVADFGLSKLLVDSERGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSYGVLMLELATARRPIEQGKYIVREVMRVMDTSKDLYNLHSILDPTIMKTKPKGLEKFVTLAMRCVKEYAAERPTMAEVVKEIESIIELVGLNPNSESATTSETYEEAGGGNAQHPYREEDFSYSGMFPSTRVEPQ 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01723 929 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 684 892 - -
Vian6g01723 929 FunFam Leucine-rich repeat family protein 27 181 - -
Vian6g01723 929 FunFam Leucine-rich repeat protein kinase family protein 575 683 - -
Vian6g01723 929 Pfam Leucine rich repeat 241 298 IPR001611 GO:0005515
Vian6g01723 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 728 740 IPR008271 GO:0004672|GO:0006468
Vian6g01723 929 CDD STKc_IRAK 614 879 - -
Vian6g01723 929 Gene3D Transferase(Phosphotransferase) domain 1 684 896 - -
Vian6g01723 929 Gene3D Ribonuclease Inhibitor 282 385 IPR032675 -
Vian6g01723 929 FunFam Leucine-rich repeat protein kinase family protein 183 282 - -
Vian6g01723 929 Gene3D Phosphorylase Kinase; domain 1 578 683 - -
Vian6g01723 929 SUPERFAMILY Protein kinase-like (PK-like) 594 887 IPR011009 -
Vian6g01723 929 MobiDBLite consensus disorder prediction 888 929 - -
Vian6g01723 929 Pfam Protein kinase domain 609 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01723 929 ProSitePatterns Protein kinases ATP-binding region signature. 614 640 IPR017441 GO:0005524
Vian6g01723 929 SUPERFAMILY L domain-like 59 369 - -
Vian6g01723 929 PANTHER RECEPTOR-LIKE PROTEIN 55 34 879 - -
Vian6g01723 929 Gene3D Ribonuclease Inhibitor 183 281 IPR032675 -
Vian6g01723 929 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Vian6g01723 929 ProSiteProfiles Protein kinase domain profile. 608 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01723 929 SMART serkin_6 608 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01723 929 ProSiteProfiles Leucine-rich repeat profile. 336 357 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01723 Vian-Chr6 34710166 34716882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01723 8 929 Receptor kinase-like Gene Family AT5G49760 52.366 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vian6g01723 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01723 - - gmx:100786172 1592.02