Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01720 ATGGCTTCTTCTAACAGACACTGGCCGAGCATGTTCAAGTCTAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACTCCTCCCTCATCTCAACTGGTTGCCACAGAAGCCCTTACACTTCAGGTACCGGTTGTGAAGAGAGAAGTCCGGAGCCAAAGCCAAGGTGGAATCCAAAACCTGAGCAAATTCGGATTCTGGAAGCTATATTCAACTCAGGAATGGTGAATCCTCCTAGGGATGAAATAAGAAAGATAAGGGCACAGTTACAAGAGTATGGCCAAGTGGGTGATGCAAACGTATTCTATTGGTTTCAGAACCGCAAATCAAGGAGCAAACACAAGCTTCGCCATCTCCAAAACATGAAAAACCAGAACCTTGAAGCTCAACAAAACCCCACATCTCTCCCTCAAATCACTGCACCATCATCCTCGTCTTCCTCCTCTGAGAAATCCTCTCCAAAAGAATTAATACCTACCAAGGTATTTTCCATCGGATTCTCTAACGTCACCGATGTGGTACCTAATTCTCCGACTACTTCTGTGAACCAGACCTATTTTCAGACTCACAACGAGTCTTCCATGCTTCCACCCCCACCTGCTGCTGCTGCCGCACAAACTGGGGGTTTCTTCTTCCCAGTGCAACATCATGGGCAGGGAGTACCACCTAGTACGGTGGCATCCCAAGGGTTTTGCTTCTCGGAGCTGTCCAATGTTGTTCAACTTCAATCACCTCCTCAACACAACGTTGGTCCTTGCACCAGTCTCTTGCTCAGTGAAATCGTAGGCCACGGTGGTGCTGCTTCAAAGAAAGATCTGGAACAAGACAAGAGTCTGAAAATAATGCACCACCAGCCCTCACTGTTTAATTTCTGTGTCACTCCCACAACAACAGCTCCTACTACTGCCTCAGCTGTACCTCCCATCACTACCTCAACCACCACTGTTCTATCCCCCGTCATTGCTCAAGTTCAAGGCATGGCAGATCCAGCTGCTGCGGCGAGATCAACGGTGTTCATTAACGATGTGGCATTCGAGGTAGCGGTGGGTCCTTTCAATGTGCGTGAAGCTTTTGGAGATGATGCTGTGCTCATCCACGCCACTGGTCAACCTGTGCTAACAAACCAATGGGGTGTCACTCTTCATTCACTCCAGCATGGTGCATGTTATTATTTGGTGCGCACATTAGACCTGCTTCTGTTGCAATAA 1212 0.4835 MASSNRHWPSMFKSKPCNPHHQWQHDINSSLISTGCHRSPYTSGTGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNMKNQNLEAQQNPTSLPQITAPSSSSSSSEKSSPKELIPTKVFSIGFSNVTDVVPNSPTTSVNQTYFQTHNESSMLPPPPAAAAAQTGGFFFPVQHHGQGVPPSTVASQGFCFSELSNVVQLQSPPQHNVGPCTSLLLSEIVGHGGAASKKDLEQDKSLKIMHHQPSLFNFCVTPTTTAPTTASAVPPITTSTTTVLSPVIAQVQGMADPAAAARSTVFINDVAFEVAVGPFNVREAFGDDAVLIHATGQPVLTNQWGVTLHSLQHGACYYLVRTLDLLLLQ 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01720 403 MobiDBLite consensus disorder prediction 129 156 - -
Vian6g01720 403 SMART HOX_1 53 120 IPR001356 GO:0003677
Vian6g01720 403 CDD homeodomain 54 116 IPR001356 GO:0003677
Vian6g01720 403 FunFam WUSCHEL-related homeobox 11 55 122 - -
Vian6g01720 403 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Vian6g01720 403 MobiDBLite consensus disorder prediction 39 62 - -
Vian6g01720 403 SUPERFAMILY Homeodomain-like 51 120 IPR009057 -
Vian6g01720 403 Gene3D - 55 121 - -
Vian6g01720 403 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 395 IPR044557 GO:0003700|GO:0050793
Vian6g01720 403 Pfam Homeodomain 55 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01720 Vian-Chr6 34692346 34694421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01720 1 394 Wox Gene Family AT5G45980 36.935 3.58e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian6g01720 Homeodomain 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01720 - - pvu:PHAVU_006G179900g 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01720 6 34692346 34694421 Vian6g01720 6 34692346 34694421 ECH