Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01719 ATGAAGAATGAGATCGTTTATGTGGATTCGTTGTTAAGAGAACTGCGAATTAGTTGTGGTTATATATGCCAAGTCCAAAACCACTTGACACACCTTTGCCAACTTCTCCTCTCTTCCAAAACCAGACAAACGCAGAGGAAACAAAAACAGAGACTCACTCAAACAAACATGGGAACCAACAAAAACTACGAGGAACAGAGCAGGCTCTCCTTTTCTCAATTCCAAACAGAGTTCTTACCCTTCAACGAGAACGACCCTCAGGACATGGTCATATACCAAGTTCTCAACGAGGCCAATGCTCTCTCCAACACATTCCACCCTCACCAGAGACTCCACCAACCGCAATTGGGCCTCGAGCCCACCAGAAACATCGCCAAAAAACACTACAGAGGAGTTCGCCGCCGACCCTGGGGGAAGTACGCCGCCGAGATTCGGGACTCCGCACGCCACGGCGCCAGAATATGGCTCGGCACCTTCCAGACCGCCGAAGAGGCCGCCATGGCTTACGACCGCGCCGCCTTCAAGATGAGAGGCGCCAAGGCTTTGCTCAATTTCCCAGCCGAAATCGTGGCTGCGGCCTCAGAGTCATCGTTCAATAATAATAATAATAATAATAACAACGATGCTGTTTCTGATTGTAGTGGTGGAAGCTCTTGCACCACGAACAATTCCACTCAGGTAAATGGGTCTCGGTCAGAAAGCACAAGTAGCACTAGTTAG 720 0.4944 MKNEIVYVDSLLRELRISCGYICQVQNHLTHLCQLLLSSKTRQTQRKQKQRLTQTNMGTNKNYEEQSRLSFSQFQTEFLPFNENDPQDMVIYQVLNEANALSNTFHPHQRLHQPQLGLEPTRNIAKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGAKALLNFPAEIVAAASESSFNNNNNNNNNDAVSDCSGGSSCTTNNSTQVNGSRSESTSSTS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01719 239 ProSiteProfiles AP2/ERF domain profile. 128 186 IPR001471 GO:0003700|GO:0006355
Vian6g01719 239 MobiDBLite consensus disorder prediction 199 239 - -
Vian6g01719 239 MobiDBLite consensus disorder prediction 44 66 - -
Vian6g01719 239 PANTHER DNA-BINDING DOMAIN 65 226 IPR044808 GO:0003700|GO:0009873
Vian6g01719 239 FunFam Ethylene-responsive transcription factor 2 127 188 - -
Vian6g01719 239 CDD AP2 127 187 IPR001471 GO:0003700|GO:0006355
Vian6g01719 239 SMART rav1_2 128 192 IPR001471 GO:0003700|GO:0006355
Vian6g01719 239 Gene3D AP2/ERF domain 127 188 IPR036955 GO:0003700|GO:0006355
Vian6g01719 239 PRINTS Ethylene responsive element binding protein signature 152 168 IPR001471 GO:0003700|GO:0006355
Vian6g01719 239 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Vian6g01719 239 SUPERFAMILY DNA-binding domain 128 188 IPR016177 GO:0003677
Vian6g01719 239 Pfam AP2 domain 128 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01719 Vian-Chr6 34674043 34675218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01719 79 189 AP2-EREBP Transcription Factor Family AT5G47220 48.462 1.79e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian6g01719 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01719 K13433 - gmx:100811533 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01719 6 34674043 34675218 Vian6g01719 6 34674043 34675218 ECH