Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01714 ATGAATTTTCTCTTCTTTTATGTACTCATCTCCCTTGTTCTTATTAATGGCTACCAAGATGAAGCTACAACAATAGACAACCAAGTTATATCTGTTGGGGCAATCATTGATGTGAATTCTCGCATTGGGAAAGAACAGAAAATGGCCATGGACATTGCAGCTCGAAGTTACAATAGCACTTCAAAGACCTACAAGATGGCTCTCTATTTCCGGAACTCCACCGACAATCCTCTTAAAGCCATCACTCTTGCTGAAGAGATGATTGATAAGCAAAAGGTGGAAGTGATTATCGGGATGCACAGATGGTCAGAAGCAGCTCTAGTGGCTGAAATAGGAAGCCAAACTCAAGTTCCTATTATAGCATTTGCAGAACCCACCGTTACCCCGCCGTTGATGAGTAATAGGTGGCCTTTTTTGGTGAGAATGACTAGGAGTGATTTATCATATATCAAATGCATTGTAGATATAGTGAAAGCTTTTGGTTGGCAGAGAGTAGTAGCTATCTATGAAGATGATGCATATGGAGGTGACTATGGCATGCTAGCACTGCTATCTGAGGCCCTCCGGGATGTGAGTTCATCGATTGATTATCACTTAGTTCTTCCACCTATTTCTTCTCTGCATGAACCAGGAGAGTTTATACGTGAAAAACTGTTGAAGTTGTTGCAAACCCAATCTCGCGTTTTCATTGTGCTGCGATCTTCATTAGAAATGGCTATCCATTTGTTTAAAGAAGCCTCAAAAATGGGATTCGTGGACAAAGAATCAGCATGGATACTTCCAGAGAGCATAACAAATGTGCTGGACTCTGTCAACAAGTCTGCTATTTCCTATATGGATGGAGCTTTAGGAATCAAAACGTACTACTCCGAAATAAGCCCCGAGTACCCAGATTTTGAGGCTGAATTCTTGAGAACATTTTGGTCCAAGAATGTCGAGGAAGATAACCGCTACCCCGGATTTTATGCATTGCAAGCTTATGATAGCATTAAAATTGTGACCCAAGCAGTAAGCAGAATGACCAATAGAAACACTTGGAGCCCAAAGAATTTACTTGGAGAAATACTGGGTAGCAGTTTTCTTGGTTTAAGCGGTCATATTCAATTCAAAGATGGGAAACTCCAGCAGACTTCTATTTTAAGGATGGTAAATGTGGCCGGGAAGAGTTACAAGGAACTATGCTTTTGGAGTGAACAATATGGGTTCACCAAAAACCTCTCTACAGGAAAAGGTGGACATTCTGGCGCTGGTAATACAGAATGTTTCAGTGCTGTTCGGTGGCCTGGCAATCTGAAAAGGGATCCAAAAGGCTGGAATATGCCTACTAAACAAAATCGTATGAAAATTGCAGTCCGAAGCAGAACCTCTTTTTCCAAGTTTGTCAAGGTTGATTATGAACATGAGGGCGATCCTGCAACATATAGTGGATTTTGTATCGATATTTTTCAGGGCGTGCTCGACCTTTTGGGGTATGACTTGCCATACGATTATTATCCTATTGATGGAACCTATAATGATTTGGTTCAGCTTGTCTATAACAAGAGTTATGATGCCGTAGTTGGGGACATGACCATACTAGAAGAAAGAATGCAGTATGTGGATTTTACAGTGCCATATGCAGAATCAGGGTTGACAATGGTAGTTCCATCAAAGTCTAAAGAGTCGGCATGGATGTTCACAAAGCCCTTTACCTGGGAAATGTGGATGGTTACGGGTGGCATCTTGATTTACACAATGTTAGCAGTTTGGTACCTTGAGAGGGAATTCAATCCCGAGTTTCATGGCAATTGGGGCAGCCAAATCAGCACAGCTCTTTGGTTTACCTTCTCCTCTTTGTTTTTCGCTCACAGGGAAAAAATGCAGAGCAACTTAACTCGCATCGTGATGGTCTCATGGCTCTTGCTAGTTCTGATCCTTAACTCATCCTACACTGCTAACCTTTCTTCAATGCTCACGGTTAAACAACTGGAACTGAATGTCCCAGATATTCAGCTGTTGAAGAGGAACAACAAGACAATTGGTTGCGATGGTGACTCATTTGTTAGGTCGTTCCTAGAGAAAGTAGAAGGGTTCCCGCCTGGGAACATAAAAAATATCACTGATGAATACACGTATGATGGTTTTTTTCAAAATAACAGCATAGCAGCTGCCTTTCTTGAACTCCCATACGAAAAGGTATTCATCACTGAATACTGTAACAAATACACCGGTTCCACTCCCAGAACCAGATTTGGAGGACTGGGCTTTATGTTCCAGAAAGGATCGCCAGTGGCCAGAGATGTGTCAAAAGCTATATTACATATGTCAGAGAATGCAGAGCTGAAGAGGTTGGAGGAGAAGTGGTTGATTAGCTCCGGCAAGTGCTCCAACACGACCTCCGACACCAACAACCCGGAAAGTTTGAAGCTAAGAAGTTTATGGATTTTATATGTCATCTCTGGTGCTACTTCCACCATTTGTCTGCTACTATCAACCATCCAATCTCTGGTAAAATCAACTAAGCAACGCCAACGCGTGGCACCAGAAGGCAATGACACCCCAGATTATCAAAATGCGTGGGAAAAGGTGATTGCACATGTAAAGCAGATTTACAACAAAAAGATCAATAATTCAAGAGAGACACGGACACAGGTTGTTACTGATTTTCTTCCAGTGCCTGAAAATTCAATGCTCCCTTCTCCATCACCAGGGTTACACATGACAACACAGACATAG 2715 0.4206 MNFLFFYVLISLVLINGYQDEATTIDNQVISVGAIIDVNSRIGKEQKMAMDIAARSYNSTSKTYKMALYFRNSTDNPLKAITLAEEMIDKQKVEVIIGMHRWSEAALVAEIGSQTQVPIIAFAEPTVTPPLMSNRWPFLVRMTRSDLSYIKCIVDIVKAFGWQRVVAIYEDDAYGGDYGMLALLSEALRDVSSSIDYHLVLPPISSLHEPGEFIREKLLKLLQTQSRVFIVLRSSLEMAIHLFKEASKMGFVDKESAWILPESITNVLDSVNKSAISYMDGALGIKTYYSEISPEYPDFEAEFLRTFWSKNVEEDNRYPGFYALQAYDSIKIVTQAVSRMTNRNTWSPKNLLGEILGSSFLGLSGHIQFKDGKLQQTSILRMVNVAGKSYKELCFWSEQYGFTKNLSTGKGGHSGAGNTECFSAVRWPGNLKRDPKGWNMPTKQNRMKIAVRSRTSFSKFVKVDYEHEGDPATYSGFCIDIFQGVLDLLGYDLPYDYYPIDGTYNDLVQLVYNKSYDAVVGDMTILEERMQYVDFTVPYAESGLTMVVPSKSKESAWMFTKPFTWEMWMVTGGILIYTMLAVWYLEREFNPEFHGNWGSQISTALWFTFSSLFFAHREKMQSNLTRIVMVSWLLLVLILNSSYTANLSSMLTVKQLELNVPDIQLLKRNNKTIGCDGDSFVRSFLEKVEGFPPGNIKNITDEYTYDGFFQNNSIAAAFLELPYEKVFITEYCNKYTGSTPRTRFGGLGFMFQKGSPVARDVSKAILHMSENAELKRLEEKWLISSGKCSNTTSDTNNPESLKLRSLWILYVISGATSTICLLLSTIQSLVKSTKQRQRVAPEGNDTPDYQNAWEKVIAHVKQIYNKKINNSRETRTQVVTDFLPVPENSMLPSPSPGLHMTTQT 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01714 904 FunFam Glutamate receptor 149 317 - -
Vian6g01714 904 PIRSF IGluLR_plant 1 889 IPR017103 -
Vian6g01714 904 Gene3D - 719 789 - -
Vian6g01714 904 Gene3D - 145 399 - -
Vian6g01714 904 Gene3D - 35 377 - -
Vian6g01714 904 FunFam Glutamate receptor 556 686 - -
Vian6g01714 904 SMART GluR_14 448 784 IPR001320 GO:0015276|GO:0016020
Vian6g01714 904 CDD PBP1_GABAb_receptor_plant 31 406 IPR044440 -
Vian6g01714 904 MobiDBLite consensus disorder prediction 885 904 - -
Vian6g01714 904 Gene3D - 556 687 - -
Vian6g01714 904 Gene3D - 434 555 - -
Vian6g01714 904 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 859 IPR015683 -
Vian6g01714 904 SUPERFAMILY Periplasmic binding protein-like I 27 438 IPR028082 -
Vian6g01714 904 FunFam Glutamate receptor 446 557 - -
Vian6g01714 904 Pfam Ligand-gated ion channel 783 814 IPR001320 GO:0015276|GO:0016020
Vian6g01714 904 Pfam Bacterial extracellular solute-binding proteins, family 3 471 782 IPR001638 -
Vian6g01714 904 CDD GluR_Plant 445 782 - -
Vian6g01714 904 Pfam Receptor family ligand binding region 47 373 IPR001828 -
Vian6g01714 904 SUPERFAMILY Periplasmic binding protein-like II 423 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01714 Vian-Chr6 34631897 34635686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01714 3 823 Ion Channels AT2G29120 32.394 2.63e-140 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01714 - - gmx:100818619 1401.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01714 6 34631897 34635686 Vian6g01714 6 34631897 34635686 ECH