Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01687 ATGGCTGAGGAATCTCAAGGGATTAAGCTCTTTGGCGCAATGATTAGACTCAACAGTGAGGAGGTCAAGAAGGGAGAAAAAGGAAGGGAATACAAGAGGGAGGAGAAGAGAACAGAGAAGATAATACCGTGTCCTAGATGCAAGAGCATGGAAACTAAATTCTGCTACTTCAATAACTACAACGTTAATCAGCCAAGGCATTTTTGTAAGAGCTGCCAGAGGTATTGGACTGCTGGTGGGGCCCTCCGCAACGTCGCTGTCGGTGCCGGCCGTCGGAAGGGCAAGCCGCCGTGTCATGGTGCCGCTGAGTTCCCCGATGGGGCTGTCTATGAAAGTTCGGAAGACGAGAACAAATTTGAGATTGGAAGTAGGTTGGTTTCAGAAGAGGTTCACAATGATTTTCGGCAAATTTTCCCGGCGGCCAAGCGGCGGAGGACTCCATCAGATAAAACTTGGAGAAGTAATCATATTCAGAGATCCAATGGGTATAAACAATGA 498 0.4799 MAEESQGIKLFGAMIRLNSEEVKKGEKGREYKREEKRTEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVAVGAGRRKGKPPCHGAAEFPDGAVYESSEDENKFEIGSRLVSEEVHNDFRQIFPAAKRRRTPSDKTWRSNHIQRSNGYKQ 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01687 165 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Vian6g01687 165 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Vian6g01687 165 PANTHER CYCLIC DOF FACTOR 2 26 103 IPR045174 GO:0003700|GO:0006355
Vian6g01687 165 MobiDBLite consensus disorder prediction 139 165 - -
Vian6g01687 165 Pfam Dof domain, zinc finger 40 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01687 Vian-Chr6 34397205 34398022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01687 3 149 C2C2-Dof Transcription Factor Family AT1G29160 50.867 7.45e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian6g01687 zf-Dof 4.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01687 - - gmx:100820604 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01687 6 34397205 34398022 Vian6g01687 6 34397205 34398022 ECH