Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01676 ATGTCAGAAGGACATGAGATTCATAACAATGAGGAAAGTTCATCTGGATGTTCCCAGAAGTGCTCTTCATTTGACTTGAATGCAGAAGCTTGCAGTGACGATAACACTAATGGTAATACAGAAGATGGGTATGAGCTCACAACAAACGAGAATAATGTTGAGAAAGTCAACGACGAGGGAACTTCAGGAAATGGAAGTAGCATTTCAAGAGAAGGAAATGCCAGAAGAGGAACTGTGAGACAATATGTTAGATCCAAGATGCCTCGGCTTCGGTGGACTCCTGAACTTCATCATTCATTTGTGCATGTTGTTGAAAGACTTGGTGGTCAAGAGAGAGCAACACCCAAGTTGGTGCTTCAGCTAATGAATGTGCAAGGACTCAGCATTGCTCACGTCAAGAGCCACTTGCAGATGTATCGAAGCAAGAAACTTGACGAGGCTGGGCAAGTACTAAGTCAAACGTATAAGTGGAATCAAAACCAAAAGTTACGTAGGTCTGTGATACTGCATGAGTCCATGAATCCTCAACAACATCTTAAGATGGGGAATGGTGGAATCATTCTGGCAACTCAATTCAACAATTGTCATTTTCCAAGTCTCGTGGACACACCCTTTCCCTTGTCACCATCCCATACAAACGACACTGATTCAAGGCAGCAGCAATGGTACATCAATCATCAAACTTTTAGAAAATCAATAGCTTCTGGCCATATTCAGGCAAAGGATACAACTACGAGACCAAGCAAATTGCTTGAAGAGAAAAGCTGGCTTCCGTTAGAAATTATAAGCAATCATCAATCCAAGTTCCAGAAGTTACCTGCCACTGTAGCTCCAAAAAATTATGGATCACAAGCAGTTCAGCTAGCTGAATGGAGCTTCGTGAACAAAACAAGCGTCACAGAATATTTATCGAACAAATCCAATGAACCTCGCAACTATTCCAACAGTTTAAAGCTACAATTTGATCCACCATTTCGGATTAAGAAAGACGAACAAGAATTACCTAATTTGCAACTGGGTTTGAGTTACACAATTGCAAGCGATGGTGACAAGATGGATCATTATAAAGAAACCCAAGAAATCAGCACCAAGCTTTCACTTTCTTAA 1107 0.4101 MSEGHEIHNNEESSSGCSQKCSSFDLNAEACSDDNTNGNTEDGYELTTNENNVEKVNDEGTSGNGSSISREGNARRGTVRQYVRSKMPRLRWTPELHHSFVHVVERLGGQERATPKLVLQLMNVQGLSIAHVKSHLQMYRSKKLDEAGQVLSQTYKWNQNQKLRRSVILHESMNPQQHLKMGNGGIILATQFNNCHFPSLVDTPFPLSPSHTNDTDSRQQQWYINHQTFRKSIASGHIQAKDTTTRPSKLLEEKSWLPLEIISNHQSKFQKLPATVAPKNYGSQAVQLAEWSFVNKTSVTEYLSNKSNEPRNYSNSLKLQFDPPFRIKKDEQELPNLQLGLSYTIASDGDKMDHYKETQEISTKLSLS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01676 368 Pfam Myb-like DNA-binding domain 90 140 IPR001005 -
Vian6g01676 368 NCBIfam myb-like DNA-binding domain, SHAQKYF class 88 143 IPR006447 GO:0003677
Vian6g01676 368 MobiDBLite consensus disorder prediction 32 81 - -
Vian6g01676 368 FunFam Myb family transcription factor 86 144 - -
Vian6g01676 368 Gene3D - 87 144 - -
Vian6g01676 368 MobiDBLite consensus disorder prediction 32 74 - -
Vian6g01676 368 SUPERFAMILY Homeodomain-like 86 142 IPR009057 -
Vian6g01676 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 60 188 IPR046955 GO:0003700
Vian6g01676 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 144 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01676 Vian-Chr6 34283680 34286305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01676 79 149 G2-like Transcription Factor Family AT2G42660 74.648 2.53e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian6g01676 Myb_DNA-binding 2.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01676 - - vun:114187451 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01676 6 34283680 34286305 Vian6g01676 6 34283680 34286305 ECH
Vian6g01676 6 34283680 34286305 Vian1g03309 1 55206469 55210994 ECH
Vian1g03309 1 55206469 55210994 Vian6g01676 6 34283680 34286305 PCT