Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01669 ATGTCCAAGTTGGAGGTTCTAGATCTGTCTGGGAATTTCTTACAAGGGCAGGTACCAAACTGGTTGTGGACAAGCTCATCCTTATTGGTAGTGAACCTTTCCCAGAACAGCTTCGGAGGGAGCATTAACCCCACTTACCAAAACGGTTCCTTTTCATCGCTGAAAAATCTCAATCTCTCATACAACAGGTTCACCAACCAGCTTCACCTCTCTGTTTTTTCAAACCTTGAAAGCCTCGACCTTTCACACAATAACCTCAGAACTTTACCTTTGGGATTCCAAAACCTCACCAATCTACACCACCTTAATCTCTCCAACTGCAACATCAAAGGCAGCGTAAAACCCATTTCCACCCTAACCTCACTATCCTTCTTGGACCTTTCGAACAACTCTTTGAACGGTAGCTTCCCCTCGGATTTCCCTCCCTTGAAGACCATCAAATTCTTGAACATCTCTCACAACAACTTCAAAACATCCACCGCATTAGACAGATTCAAAAAGTTCGGCAAATCGGCGTTCATTCACGCTGGTAACAACTTCAGCTTCACCGCATCCAAAACCCCAAAGCTAGGTGCAACCTCGACATCAGCTTCAACTTCAACCCCACCACACCAACAGTCCCACCACATCCAGGCGGAGAAGAAGAGGCCAAGAGAAAAGCAAAAGTCAAAACAGAAACCAAGAAGCATGATTGCGGCCCTGTCGTGTGCCTCGGCACTCGTGGTTGTCGGATTGTGCATGTGCGTTGTGTGGCGTTGCAGAAGGAAGAGGCAACTGGCAAAAAGGAACAAGTGGGCGATCTCTAAACCGGTCCCAGTGAACGTGAAAATGGAGAAATCGGGACCCTTCGCATTCGAGACAGAATCAGGGACATCCTGGGTGGCTGACCTGAAGGAACCCTCTTCCGCACCCGTGGTCATGTTCGAAAAGCCTCTCATGAACCTCACCTTCGTGGACCTCATCGCTGCCACGTCACACTTTGGCAAAGACTCTCTCCTGGCTGAGGGCAGGTGTGGGCCCGTGTACCGCGCTGTCTTAACCGGAGACATCCACGTGGCAATCAAAGTCATCGAAAACGCCAGAGACGTCCATCATGATGACGCTGTCGCTCTCTTCGTTGACCTTTCCCAACTCAAACACCCCAATCTTTTGCCCCTCTCCGGTTACTGTATTGCAGGGAAGGAGAAGCTCGTGCTGTACGAGTTTATGTCCAACGGAGATTTGGGTAGGTGGTTGCAGGAACTACCGGCAGGGGAGACTAACGTCGAGGATTGGAGCGGTGACACATGGGAGATTATTCAAAACGGCGCCGTTTCTCGAGCCTCGCCGCCGGAAAAGATGGGCTGGCCAATACGCCACCGTATTGCGGTGGGCGTGGCGCGTGGGTTGGCGTTTCTGCACCACGCGGGGTCAAGGCCCGTTGTGCACGGCCATCTCGTGACCTCCAATGTCCTTCTCGGCGACGACTTCGAGCCGCGAATCGCGGATTTCGGGTTCCGGAAGTTTGGAAGGGAGGGTGCTGCCGCCGCGACGAACTGTTCGACGGAGACGGATGTTTACTGCTTTGGTGTGGTGCTTATGGAGCTTCTGACGGGGAGGGGCGGCACTGCGGAGACGGTGGTTTGGGTGAGGAAGGCGGTAAGGGAGGGACACGCTGTGAAGGCGCTGGATGAGAGGCTTAAACTCGGCAGCGGCGGCGACTCGGAGAGTGAGATGGTGGAGAGCCTCCGAGTAGCGTATTTGTGTACGGCCGAGTCACCCGGGAAGAGGCCCAGCATGCAGCAGGTATTGGGCCTGCTGAAAGATATTCACCCGAGTCACGGACTGGACTGA 1833 0.5319 MSKLEVLDLSGNFLQGQVPNWLWTSSSLLVVNLSQNSFGGSINPTYQNGSFSSLKNLNLSYNRFTNQLHLSVFSNLESLDLSHNNLRTLPLGFQNLTNLHHLNLSNCNIKGSVKPISTLTSLSFLDLSNNSLNGSFPSDFPPLKTIKFLNISHNNFKTSTALDRFKKFGKSAFIHAGNNFSFTASKTPKLGATSTSASTSTPPHQQSHHIQAEKKRPREKQKSKQKPRSMIAALSCASALVVVGLCMCVVWRCRRKRQLAKRNKWAISKPVPVNVKMEKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLMNLTFVDLIAATSHFGKDSLLAEGRCGPVYRAVLTGDIHVAIKVIENARDVHHDDAVALFVDLSQLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLQELPAGETNVEDWSGDTWEIIQNGAVSRASPPEKMGWPIRHRIAVGVARGLAFLHHAGSRPVVHGHLVTSNVLLGDDFEPRIADFGFRKFGREGAAAATNCSTETDVYCFGVVLMELLTGRGGTAETVVWVRKAVREGHAVKALDERLKLGSGGDSESEMVESLRVAYLCTAESPGKRPSMQQVLGLLKDIHPSHGLD 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01669 610 FunFam Putative LRR receptor-like serine/threonine-protein kinase 288 402 - -
Vian6g01669 610 Gene3D Ribonuclease Inhibitor 1 68 IPR032675 -
Vian6g01669 610 PRINTS Leucine-rich repeat signature 76 89 - -
Vian6g01669 610 PRINTS Leucine-rich repeat signature 119 132 - -
Vian6g01669 610 SUPERFAMILY Protein kinase-like (PK-like) 304 601 IPR011009 -
Vian6g01669 610 MobiDBLite consensus disorder prediction 191 228 - -
Vian6g01669 610 Pfam Protein tyrosine and serine/threonine kinase 331 501 IPR001245 GO:0004672|GO:0006468
Vian6g01669 610 ProSiteProfiles Leucine-rich repeat profile. 98 120 IPR001611 GO:0005515
Vian6g01669 610 MobiDBLite consensus disorder prediction 191 207 - -
Vian6g01669 610 Gene3D Phosphorylase Kinase; domain 1 287 402 - -
Vian6g01669 610 Gene3D Transferase(Phosphotransferase) domain 1 432 608 - -
Vian6g01669 610 Pfam Leucine rich repeat 53 109 IPR001611 GO:0005515
Vian6g01669 610 ProSiteProfiles Leucine-rich repeat profile. 75 97 IPR001611 GO:0005515
Vian6g01669 610 Gene3D Ribonuclease Inhibitor 69 220 IPR032675 -
Vian6g01669 610 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 603 - -
Vian6g01669 610 ProSiteProfiles Protein kinase domain profile. 327 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01669 610 SUPERFAMILY L domain-like 2 159 - -
Vian6g01669 610 Pfam Leucine Rich Repeat 3 21 IPR001611 GO:0005515
Vian6g01669 610 SMART LRR_typ_2 73 95 IPR003591 -
Vian6g01669 610 SMART LRR_typ_2 119 142 IPR003591 -
Vian6g01669 610 SMART LRR_typ_2 1 25 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01669 Vian-Chr6 34212649 34214761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01669 1 603 Receptor kinase-like Gene Family AT5G07280 29.751 5.88e-68 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vian6g01669 PK_Tyr_Ser-Thr 7.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01669 - - gmx:100778920 1040.8