Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01667 ATGGCTGAGGATAAGGAGATGTCCTCCTCGGTCGTCAATGACAATGATTCCCTCACTGGTCACATCATATCCACAACTATCGGAGGCAAAAACGGGGAGCCCAAACAGACTATTAGTTACAAGGCCGAACGAGTTGTAGGAACTGGCTCGTTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAAGCAGTGGCCATTAAAAAGGTTTTACAGGACAGAAGATACAAGAACCGTGAACTACAGTTAATGCGAGTCTTGGATCATCCAAATGTGATCTCACTGAAGCATTGTTTCTTCTCAACTACAAGTAGAGATGAACTTTTTCTAAATTTGGTGATGGAATATGTTCCAGAGTCCATGTATAGAGTCTTAAAGCACTATAGCAATGCTAATCAAAGAATGCCGATCATCTATGTGAAACTTTACATGTACCAGATTTTCAGGGGATTGGCTTATATTCACACTGTTCCCAAAGTTTGCCACAGAGACTTGAAGCCTCAAAATATTCTGGTGGATCCTCTTACACACCAAGTAAAGCTATGTGATTTTGGAAGTGCCAAAGTTCTAGTGAAAGGCGAAGCTAATATATCATACATATGTTCACGATTCTATCGTGCTCCAGAACTTATATTTGGTGCCACAGAGTATACGACTTCTATTGATATTTGGTCAGCTGGCTGTGTTCTTGCTGAACTTCTTCTGGGCCAGCCATTATTCCCAGGAGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGGTGCTTGGCACACCAACTCGAGAGGAAGTACGCTGCATGAATCCCAATTACAATGACTTTAGATTTCCACAGATAAAAGCACACCCATGGCACAAGATTTTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTGGCATCTCGGCTTTTGCAATACTCCCCAAGTCTTCGGTGTAATGCGCTTGAAGCATGTGTACATCCTTTCTTTGATGAACTTCGAGAGCCCATTGCTCGCCTGCCAAATGGCCGTTCATTTCCTCCTCTATTTAACTTCAAACAGGAATTAACCGGAGCGTCTCCTGAGCTTATTAACAAGTTGATACCTGACCATGTGAAGCGGCAAATAGGGATACAATTTGTTCATCCAATAGGATCGTGA 1143 0.4226 MAEDKEMSSSVVNDNDSLTGHIISTTIGGKNGEPKQTISYKAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVLDHPNVISLKHCFFSTTSRDELFLNLVMEYVPESMYRVLKHYSNANQRMPIIYVKLYMYQIFRGLAYIHTVPKVCHRDLKPQNILVDPLTHQVKLCDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCNALEACVHPFFDELREPIARLPNGRSFPPLFNFKQELTGASPELINKLIPDHVKRQIGIQFVHPIGS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01667 380 CDD STKc_GSK3 35 327 IPR039192 -
Vian6g01667 380 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Vian6g01667 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vian6g01667 380 SMART serkin_6 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01667 380 FunFam Shaggy-related protein kinase kappa 120 367 - -
Vian6g01667 380 FunFam Glycogen synthase kinase-3 beta 24 119 - -
Vian6g01667 380 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 5 369 - -
Vian6g01667 380 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01667 380 Gene3D Phosphorylase Kinase; domain 1 25 119 - -
Vian6g01667 380 SUPERFAMILY Protein kinase-like (PK-like) 39 348 IPR011009 -
Vian6g01667 380 Gene3D Transferase(Phosphotransferase) domain 1 120 367 - -
Vian6g01667 380 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01667 Vian-Chr6 34200042 34204047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01667 44 362 MAP Kinase Gene Family AT3G59790 35.030 6.04e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vian6g01667 Pkinase 7.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01667 K14502 - gmx:100779909 744.962