LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian6g01666	ATGGAAGATGTCAAAGTGCTTGCTTCTCTAGCTTCCCTCTTTCTGTGTTATTGGGTGCTTCTTGTAGAGGGCACTGATAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCCATGAAGAGTAAGATGTATGACGAGTTTCATGTTATGCATGATTGGGATATTAATTCGGTTGACCCCTGCACTTGGTACATGGTTGGTTGCTCCGCCGAGGGTTATGTCATTTCCCTGGAAATGGCCAGTGCTGGTTTATCCGGGACGATTTCCTCAGGAATTGGAAATTTGAGCCACCTTCATACATTGTTATTGCAGAACAATAAGTTATCTGGTCCTATTCCGACAGAGATAGGAAAGCTTTTAGAGCTTCAAACCCTTGACCTTTCTGGTAACCAGCTAGATGGAGAAATTCCTAATTCATTGGGCTTTTTGACTCAACTTAGTTACCTGCGGCTCAACAAAAATAAACTATCTGGACAGATCCCTCAGCTTGTTGCTAATCTCACAGACCTTTCATTCTTGGATTTGTCATTCAATAACCTCAGTGGTCCCACTCCACAAATTTTAGCGAAAGGTTATAGTATTTCAGGGAACAACTTCCTCTGCACCTCTTCTTCTCAAATTTGTATGGGATTCTCAAAACCAGTTAATGATACAGGGTCATCTCAGTCGACTGGTGGTCATCACCAAAGGGTGCTTGCTGTTGTTATTGGCTTCAGTTGCACATTTGTAATTTCGGTGGTGCTTCTTGTATTTTGGTTGCATTGGTACAGATCAAACATTCTGTACACATCTTATGTGGAGCAAGATTGTGAATTTGATATTGGCCATCTGAAGAGGTTCTCCTTCCGTGAATTGCAAATTGCTACTGGAAGTTTCAATTCAAAAAACATCCTAGGGCAAGGCGGTTTTGGTGTTGTCTACAAAGGATGTCTTGCGAATAAAATGTTAGTGGCAGTAAAGAGGTTGAAAGATCCCAACTATACCGGAGAAGTACAGTTTCAAACAGAAGTTGAGATGATTGGCTTGGCAGTGCATCGAAACCTCTTGCGCCTTTATGGATTCTGTATGACACCGGATGAAAGGTTACTTGTTTATCCTTACATGCCCAATGGCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGTGAAAAGCCATCATTGGACTGGAACAGGCGAATGCGCGTTGCTCTTGGGACAGCACGCGGGCTTCTATACTTGCATGAACAATGCAATCCAAAAATAATCCACAGGGATGTTAAGGCCGCAAACATTTTATTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCCAAGCTCTTAGATCAAAGGGATTCACATGTAACCACTGCAGTACGAGGGACAGTAGGTCACATTGCTCCAGAATATCTCTCAACTGGACAGTCATCTGAAAAAACAGATGTTTTTGGATTTGGCATATTACTTTTGGAACTCATAACCGGACATAAGGCACTTGATGCGGGAAATGCTCAGGTCCAAAAGGGAATGATTCTTGATTGGGTTAGAACCTTATATGAGGAGAAACGGGTGGAAGTGTTAGTGGATAGGGATCTGAGGGGATGTTTTGATCCTGTAGAGTTGGAGAAAGCAGTGGATTTGTCTCTACAGTGTACTCAGTCACTTCCCACTTTGCGGCCAAAGATGTCAGAAGTTCTGAAGATTCTAGAAGGTCTGGTGGGACAGTCAATGCGGGCAGAGGAGTCACAAGGGGTGACTAACCTGTACGGTGAAAGGACTTGCAGTTTCTCACAAAATTATAGTGATGTTCACGAAGAACCTTCCTTTATTATCGAAGCCATTGAGCTCTCTGGACCTCGCTGA	1863	0.4337	MEDVKVLASLASLFLCYWVLLVEGTDSLLSPKGVNYEVAALMSMKSKMYDEFHVMHDWDINSVDPCTWYMVGCSAEGYVISLEMASAGLSGTISSGIGNLSHLHTLLLQNNKLSGPIPTEIGKLLELQTLDLSGNQLDGEIPNSLGFLTQLSYLRLNKNKLSGQIPQLVANLTDLSFLDLSFNNLSGPTPQILAKGYSISGNNFLCTSSSQICMGFSKPVNDTGSSQSTGGHHQRVLAVVIGFSCTFVISVVLLVFWLHWYRSNILYTSYVEQDCEFDIGHLKRFSFRELQIATGSFNSKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRETCREKPSLDWNRRMRVALGTARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDAGNAQVQKGMILDWVRTLYEEKRVEVLVDRDLRGCFDPVELEKAVDLSLQCTQSLPTLRPKMSEVLKILEGLVGQSMRAEESQGVTNLYGERTCSFSQNYSDVHEEPSFIIEAIELSGPR	620

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian6g01666	620	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	34	215	-	-
	Vian6g01666	620	FunFam	Somatic embryogenesis receptor-like kinase 1	373	589	-	-
	Vian6g01666	620	ProSiteProfiles	Protein kinase domain profile.	297	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian6g01666	620	Pfam	Protein kinase domain	298	567	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian6g01666	620	ProSiteProfiles	Leucine-rich repeat profile.	126	149	IPR001611	GO:0005515
	Vian6g01666	620	Gene3D	Transferase(Phosphotransferase) domain 1	373	583	-	-
	Vian6g01666	620	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	419	431	IPR008271	GO:0004672\|GO:0006468
	Vian6g01666	620	SUPERFAMILY	L domain-like	36	206	-	-
	Vian6g01666	620	Gene3D	Ribonuclease Inhibitor	34	214	IPR032675	-
	Vian6g01666	620	SMART	serkin_6	297	568	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian6g01666	620	Pfam	Leucine rich repeat N-terminal domain	35	74	IPR013210	-
	Vian6g01666	620	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	13	568	-	-
	Vian6g01666	620	FunFam	Somatic embryogenesis receptor kinase 1	267	372	-	-
	Vian6g01666	620	Gene3D	Phosphorylase Kinase; domain 1	267	372	-	-
	Vian6g01666	620	PRINTS	Leucine-rich repeat signature	172	185	-	-
	Vian6g01666	620	PRINTS	Leucine-rich repeat signature	127	140	-	-
	Vian6g01666	620	SUPERFAMILY	Protein kinase-like (PK-like)	281	583	IPR011009	-
	Vian6g01666	620	ProSitePatterns	Protein kinases ATP-binding region signature.	303	325	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian6g01666	Vian-Chr6	34193566	34197731	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian6g01666	42	620	Receptor kinase-like Gene Family	AT5G45780	70.740	0.0	810

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Vian6g01666		Pkinase	1.5e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian6g01666	-		-	ccaj:109812711	1164.06