Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01665 ATGGATCAAAACAGAAGCGAAGAAAGAGGTGAGATACTGGGTCCGGTTCATGAAAGGGTAGATGGGAATTTGAGTCATTTGGTTGAAGGGGTAGTTATTGATGCAGTAGATGGGAACAACTTGGGTGGCAGAGTTGGTATAAGGGGAGAAGCTGGAACTTCAAGAGAGGTGCGTAAGGATTTGGGATCTGAAAAGGAGCTAAAGGAGGAGCTTGAGGAAGTTAAGGATCAGGACAAGCATGGTCAAGAAAATATCAGTGATAATAAATTGCCTGGGGTTGATCAGGGAACTAGTTATAAACCAAACCATTTGGTTAATCAGGAAGTGATTGAAACTGTGGTTGTGATCGAGTCTTTTGAGACTGACTATGTCAATGAGAATAATAGGAAGTTGGAAGCAGAAGTTAATGAATCGGGGTTGAACTTTACATCCATGAAAGTACCGGAAGGGGCGTCTGAAACTGATAAAAGTTCATGTGTGATTGATATAAAATGCAGCAGCCGCAAAAGGTTTTCTGAGAATTCTGAAGGTGAACAGATTTGTAGGATTTGCCATCTGGCTTCTGTGCAGCCATCAGATGAAAATGAAGCAACTGTTGGCCCTGCTGCTAGTAGTGCTACGTGTTCAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCACATGTTCATTGTGCTGAGGCGTGGTTCAAGCTTAAGGGGAACAGGTTATGTGAAATATGCAGTGAGACTGCAACAAATGTTTCGGGTGTTAGTAATTATGAATTTATGGAAAAGTGGAATGAAAGAAGGTTCATGGAAGACGGTGGCAACTCATCCCGCAGGTTTGGTGGATGCTGGCGAGGACAACCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCATTTGTTCTGCCATGGTTTTTTCGTGTAAATGTGTTCTAG 939 0.4249 MDQNRSEERGEILGPVHERVDGNLSHLVEGVVIDAVDGNNLGGRVGIRGEAGTSREVRKDLGSEKELKEELEEVKDQDKHGQENISDNKLPGVDQGTSYKPNHLVNQEVIETVVVIESFETDYVNENNRKLEAEVNESGLNFTSMKVPEGASETDKSSCVIDIKCSSRKRFSENSEGEQICRICHLASVQPSDENEATVGPAASSATCSDLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICSETATNVSGVSNYEFMEKWNERRFMEDGGNSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNVF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01665 312 ProSiteProfiles Zinc finger RING-CH-type profile. 173 252 IPR011016 GO:0008270
Vian6g01665 312 SMART ringv_2 180 246 IPR011016 GO:0008270
Vian6g01665 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 257 IPR013083 -
Vian6g01665 312 SUPERFAMILY RING/U-box 176 248 - -
Vian6g01665 312 PANTHER ZINC FINGER, RING-CH-TYPE 76 312 - -
Vian6g01665 312 MobiDBLite consensus disorder prediction 70 85 - -
Vian6g01665 312 Coils Coil 64 84 - -
Vian6g01665 312 MobiDBLite consensus disorder prediction 70 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01665 Vian-Chr6 34184770 34187095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01665 161 311 C3H Transcription Factor Family AT5G05830 37.736 8.36e-28 105