Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01625 ATGGCAACCAGAAAAGACAAAGCCATAGGCATTGACTTGGGAACCACCTATAGCTGCGTGGCAGTGTGGCAACACAACCGCGTCGAGGTGATTCCCAACGACCAAGGCAACCGCACCACCCCTTCCTATGTTGCCTTCAACGACACTCAAAGGTTGTTGGGTGATGCTGCCATGAACCAGCGTTGCATGAATCCGCAAAACACTGTCTTCGACACCAAACGTTTGATCGGACGCAGATTCTCCGAGCAGTCCGTTCAGCAAGACATGAAGCTCTGGCCCTTCAAGGTTGTCCCTGGTTCCAGGGACAAGCCCATGATTTCTGTCACATACAGGGATGAAGAGAAGAACCTTGCAGCAGAAGAAATATCTTCCATGGTGCTGTTTAAGATGAAGGAGGTTGCCGAAGCCTATCTGGGTCACGCGGTGAATCATGCGGTGATCACTGTCCCTGCTTATTTCAGCAACGCGCAGAGACAAGCCACTAAGGATGCTGGGAAAATCGCGGGTTTGAACGTGTTGAGGATCATCAACGAGCCAACCGCAGCAGCTATAGCATACGGGTTAGACAAGAAAGGATGGAGAGAGGGTGAGCAGAACGTGCTTGTGTTTGATCTCGGCGGTGGTACTTTTGACGTTTCATTGGTGACAATTGATGAAGGGATGTTTAAGGTTAAGGCCACGGTGGGAGATACTCATTTGGGTGGTGTGGATTTTGATAACAATTTGGTGGACTATCTTGTGAGCATCTTCAAGAGAAGGTACAAAAAGGATATTGCTGAAAACCCCAAATCTCTTGGAAGGTTGAGGTTAGCGTGCGAGAAGGCCAAGAGGATACTCTCTTCGAGCTCTCAAACAACGATAGAGCTTGATTCTTTATGTGGAGGGGTTGATCTACATGCAATTCTAACAAGGGCGTTGTTCGAGGAATTGAACAAGGAGTTGTTTATGAAGTGTATGGAGACAGTGGAGAAGTGCCTTGTTGAGGCAAGGGTTGACAAAAGCAGAGTCCACGAGTTAGTTCTCGTAGGTGGGTCTACTAGAATTCCAAAAGTACAACAACTTCTGAAGGACATGTTCAGCGTAAATGGCAAAGTTAAAGAGCTTTGCAAAAGCATTAACCCTGATGAGGCAGTGGCGTACGGTGCGGCGGTGCAGGCCGCAATTTTGGGAGGCGAAGGGGACAAGAAGATTGAGGACTTATTGTTACTCGATGTTATGCCTCTTAGTCTTGGAATTGAAACCGGTGGTGGTGACATGTCGGTGTTGATTCCGAAGAACACCATGATCCCCACCAAGAAAGAGAGCGTTTTCTCCACGTTTTCTGATAATCAAACGAGCGTTCTGATTAAAGTTTACGAGGGGGAGGAAGCTAAGACAGAGGATAACTTCCTTCTTGGGAAGTTTGAGCTATCTGGGTTCGCTCCATCGCCCAGGGGGGGTCCACAGATAAATGTTGGGTTTGACGTGGATGTTGATGGCATTGTGGAGGTCACTGCTAAGGATAGGAGCACGGGGTTGAAAAAAAAGATCACGATCACTAACAAGCATGGGAGGTTGAGTTCAGAAGAGATGAGGAGGATGGTGAGAGAAGCAGAGAGGTATAAGGCAGAGGATGAGGAAGCAAAGAAGAAAGTGAAGGCGAAGAACTTGCTGGAGAATTATGCTTTTGAAATGAGGGATCGAGTGAAGAATCTCGAGAAGGTGGTGGGGGCGACCATAGAATGGCTCGACACAAACTCTTTGGCTGAAGCCGATGAGTTTGAGTACAAGATGAAGGAGTTGGAAGAAAGGGTTTTGAAGTTTATGTAA 1809 0.476 MATRKDKAIGIDLGTTYSCVAVWQHNRVEVIPNDQGNRTTPSYVAFNDTQRLLGDAAMNQRCMNPQNTVFDTKRLIGRRFSEQSVQQDMKLWPFKVVPGSRDKPMISVTYRDEEKNLAAEEISSMVLFKMKEVAEAYLGHAVNHAVITVPAYFSNAQRQATKDAGKIAGLNVLRIINEPTAAAIAYGLDKKGWREGEQNVLVFDLGGGTFDVSLVTIDEGMFKVKATVGDTHLGGVDFDNNLVDYLVSIFKRRYKKDIAENPKSLGRLRLACEKAKRILSSSSQTTIELDSLCGGVDLHAILTRALFEELNKELFMKCMETVEKCLVEARVDKSRVHELVLVGGSTRIPKVQQLLKDMFSVNGKVKELCKSINPDEAVAYGAAVQAAILGGEGDKKIEDLLLLDVMPLSLGIETGGGDMSVLIPKNTMIPTKKESVFSTFSDNQTSVLIKVYEGEEAKTEDNFLLGKFELSGFAPSPRGGPQINVGFDVDVDGIVEVTAKDRSTGLKKKITITNKHGRLSSEEMRRMVREAERYKAEDEEAKKKVKAKNLLENYAFEMRDRVKNLEKVVGATIEWLDTNSLAEADEFEYKMKELEERVLKFM 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01625 602 Gene3D - 70 125 - -
Vian6g01625 602 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 547 598 IPR029048 -
Vian6g01625 602 PRINTS 70kDa heat shock protein signature 208 218 - -
Vian6g01625 602 PRINTS 70kDa heat shock protein signature 480 496 - -
Vian6g01625 602 PRINTS 70kDa heat shock protein signature 7 20 - -
Vian6g01625 602 PRINTS 70kDa heat shock protein signature 57 65 - -
Vian6g01625 602 PRINTS 70kDa heat shock protein signature 35 47 - -
Vian6g01625 602 PRINTS 70kDa heat shock protein signature 372 392 - -
Vian6g01625 602 PRINTS 70kDa heat shock protein signature 399 418 - -
Vian6g01625 602 PRINTS 70kDa heat shock protein signature 145 165 - -
Vian6g01625 602 SUPERFAMILY Actin-like ATPase domain 197 389 IPR043129 -
Vian6g01625 602 FunFam Heat shock 70 kDa 234 317 - -
Vian6g01625 602 SUPERFAMILY Actin-like ATPase domain 7 190 IPR043129 -
Vian6g01625 602 Coils Coil 524 548 - -
Vian6g01625 602 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Vian6g01625 602 Gene3D - 9 387 - -
Vian6g01625 602 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 394 547 IPR029047 -
Vian6g01625 602 Pfam Hsp70 protein 8 601 IPR013126 GO:0005524|GO:0140662
Vian6g01625 602 Gene3D Actin; Chain A, domain 4 234 317 - -
Vian6g01625 602 PANTHER HEAT SHOCK PROTEIN 70KDA 8 566 IPR013126 GO:0005524|GO:0140662
Vian6g01625 602 FunFam Heat shock 70 kDa 394 548 - -
Vian6g01625 602 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Vian6g01625 602 ProSitePatterns Heat shock hsp70 proteins family signature 3. 339 353 IPR018181 -
Vian6g01625 602 Gene3D - 548 602 IPR029048 -
Vian6g01625 602 FunFam heat shock 70 kDa protein-like 70 125 - -
Vian6g01625 602 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 396 552 IPR029047 -
Vian6g01625 602 Gene3D - 191 369 - -
Vian6g01625 602 FunFam Heat shock protein 70 9 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01625 Vian-Chr6 33791181 33792989 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01625 1 595 Calmodulin-binding Proteins AT1G16030 67.816 0.0 861