Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01619 ATGGAATCCAAAAACCCTGCGAGGTTTACGCTGGGGAAGCAGTCATCGCTTGCCCCAGAACGCCATAACGAAGGAGCGGAGCCTCAAAACGAAGAAGGAGACGCTGTTGATCAGGGTGTGAGGTTGATGTACTCGGCGTTCGAAGGGGATGTGGATGGTATTCGCGAGGTGTTGGAGTCTGGTGTGAGTGTGAATTACAAGGATATTGATTATCGCACTGCTCTTCATGTCGCATCATGTGAGGGCTTCACTGATGTCGCTGATTTGTTACTCCAAAAAGGTGCTGAAGTTGATGCTAAAGATCGATGGGGGAGCACGCCACTTGCTGATGCTATTTGTTATAAAAGAAATGACGTGATCAAACTATTGGAGAAGCATGGAGCAAAGCCACTGATGGCCCCTATGCATGTTAATCATGCACGTGAAGTCCCAGAGTATGAAATAAATCCTGAAGAGCTCGATTTTACCAACAGTGTGGAGATAACGAAGGGGACTTTCTGTAGTGCATTGTGGCGTGGAACAGAGGTTGCAGTAAAAAAGCTTGGGGAGGAAGTAATTAGTGATGAGGAGAAAGTGAAGGCTTTCAGAGATGAACTTGCCTTGTTCCAGAAGATCCGGCATCCAAATGTCATCCAATTTCTGGGTGCTGTGACTCAGAGCAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGATTTCTTGAAAAGAAAGGGAGCTTTGAAACCATCTACAGCTGTGAGATTTGTACTTGATATTGCTAGGGGAGTGGGTTATTTGCATGAAAATAAGCCATCACCCATTATTCACCGTGATCTTGAACCTTCTAATATATTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCCGTTAAAGAAGACAAGCCTCTAACATGCCAAGAAACTTCCTGCCGGTATGTGGCTCCGGAAGTTTTCAAACAAGAAGAATATGACACCAAAGTGGATGTATTTTCATTTGCACTAATTCTACAAGAGATGATTGAAGGCTGCCCTCCTTTTTCTGCAAAGCAAGAAAATGAAGTTCCTAAGGTGTATGCTGCCAAAGAGCGTCCACCTTTTCGAGCTCCATCCAAGCATTACTCCCATGGAATTAGAGAATTGATTGAGGAGTGCTGGAATGAAAATCCAGCTATGAGGCCAACATTCAGGCAAATTATAACAAGGCTGGAGTTCATCTACAACACAATCGGTCAAAAAAGACGTTGGAAGGTTAGGCCATTGAAATGTTTCCAAAATCTGGAAGCCTTGTTAAAGAGAGATCATTCAAATGGAAGCAGTCGTGGTTCATCTCGCTCTAAATCCAGCAGAATATGA 1371 0.4427 MESKNPARFTLGKQSSLAPERHNEGAEPQNEEGDAVDQGVRLMYSAFEGDVDGIREVLESGVSVNYKDIDYRTALHVASCEGFTDVADLLLQKGAEVDAKDRWGSTPLADAICYKRNDVIKLLEKHGAKPLMAPMHVNHAREVPEYEINPEELDFTNSVEITKGTFCSALWRGTEVAVKKLGEEVISDEEKVKAFRDELALFQKIRHPNVIQFLGAVTQSSPMMIVTEYLPKGDLRDFLKRKGALKPSTAVRFVLDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDKPLTCQETSCRYVAPEVFKQEEYDTKVDVFSFALILQEMIEGCPPFSAKQENEVPKVYAAKERPPFRAPSKHYSHGIRELIEECWNENPAMRPTFRQIITRLEFIYNTIGQKRRWKVRPLKCFQNLEALLKRDHSNGSSRGSSRSKSSRI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01619 456 Pfam Protein tyrosine and serine/threonine kinase 171 408 IPR001245 GO:0004672|GO:0006468
Vian6g01619 456 SMART ANK_2a 103 132 IPR002110 GO:0005515
Vian6g01619 456 SMART ANK_2a 37 66 IPR002110 GO:0005515
Vian6g01619 456 SMART ANK_2a 70 99 IPR002110 GO:0005515
Vian6g01619 456 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 110 411 - -
Vian6g01619 456 ProSiteProfiles Ankyrin repeat region circular profile. 70 102 - -
Vian6g01619 456 CDD STKc_MAP3K-like 161 408 - -
Vian6g01619 456 Gene3D Transferase(Phosphotransferase) domain 1 231 452 - -
Vian6g01619 456 Gene3D - 8 146 IPR036770 -
Vian6g01619 456 PIRSF ILK 1 431 - -
Vian6g01619 456 Pfam Ankyrin repeats (3 copies) 42 130 IPR002110 GO:0005515
Vian6g01619 456 ProSiteProfiles Protein kinase domain profile. 120 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01619 456 SUPERFAMILY Ankyrin repeat 41 132 IPR036770 -
Vian6g01619 456 FunFam serine/threonine-protein kinase STY46-like 148 231 - -
Vian6g01619 456 ProSiteProfiles Ankyrin repeat profile. 70 102 IPR002110 GO:0005515
Vian6g01619 456 FunFam Integrin-linked protein kinase family 22 146 - -
Vian6g01619 456 PRINTS Tyrosine kinase catalytic domain signature 379 401 IPR001245 GO:0004672|GO:0006468
Vian6g01619 456 PRINTS Tyrosine kinase catalytic domain signature 227 240 IPR001245 GO:0004672|GO:0006468
Vian6g01619 456 PRINTS Tyrosine kinase catalytic domain signature 266 284 IPR001245 GO:0004672|GO:0006468
Vian6g01619 456 Gene3D Phosphorylase Kinase; domain 1 147 230 - -
Vian6g01619 456 FunFam Os01g0748600 protein 141 428 - -
Vian6g01619 456 SUPERFAMILY Protein kinase-like (PK-like) 160 411 IPR011009 -
Vian6g01619 456 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01619 Vian-Chr6 33751551 33760050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01619 8 429 MAP Kinase Kinase Kinase AT4G18950 68.310 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vian6g01619 PK_Tyr_Ser-Thr 1.4e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01619 - - gmx:100790126 828.935