Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01618 ATGGCTTTTCCAAACCCATCCATGTCAGTTTCTCCACAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACCACCAATCGCCAAGTCACTTTCTGCAAGCGCAGAAACGGCTTGCTCAAGAAAGCATATGAATTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATCGTCTTCTCTAGCCGTGGCCGTCTCTATGAATATGCTAATAACAGTGTCAAAGAAACTATTGAGAGGTACAAAAAAGCATGTTCAGATTCGTCTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGATAAACTTCGTGCACAAATAAGTAGCCTGCAGAATAACAACAGGCAAATGATGGGTGAGTCTTTGGGCTCTATGACTACCAAGGATCTCAAAAACCTGGAGAGTAAACTAGAAAAAGGAATTAGTAGGATTCGTTCAAAAAAGAACGAGCTGCTATTTGCTGAAATTGAGTACATGCAGAAGAGGGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCGAAGATAGCTGAAAGTGAGAGGAGCCACAATATGGGTGTGTTGCCTGGAGGCACAAGCTACGACTCTATGCAGTCTCAACAGCCATTTGACTCTCGTGGTTACTTCCAAGTCACTGGATTACAACCCAATAGTCAGTATGCCCGACAAGATCAGATGTCCCTTCAATTAGTATGA 723 0.4398 MAFPNPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKETIERYKKACSDSSAGSASEANAQFYQQEADKLRAQISSLQNNNRQMMGESLGSMTTKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERSHNMGVLPGGTSYDSMQSQQPFDSRGYFQVTGLQPNSQYARQDQMSLQLV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01618 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 194 - -
Vian6g01618 240 SUPERFAMILY SRF-like 17 96 IPR036879 GO:0003677|GO:0046983
Vian6g01618 240 FunFam agamous-like MADS-box protein AGL11 28 110 - -
Vian6g01618 240 Gene3D - 28 125 IPR036879 GO:0003677|GO:0046983
Vian6g01618 240 ProSiteProfiles K-box domain profile. 101 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian6g01618 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Vian6g01618 240 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Vian6g01618 240 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Vian6g01618 240 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Vian6g01618 240 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Vian6g01618 240 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Vian6g01618 240 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Vian6g01618 240 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Vian6g01618 240 Coils Coil 138 158 - -
Vian6g01618 240 Pfam K-box region 98 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian6g01618 240 Coils Coil 101 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01618 Vian-Chr6 33718966 33726761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01618 14 240 MADS-box Gene Family AT3G58780 67.234 6.78e-106 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian6g01618 K-box 1.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01618 K09264 - gmx:732595 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01618 6 33718966 33726761 Vian6g01618 6 33718966 33726761 ECH
Vian1g03364 1 55947795 55953260 Vian6g01618 6 33718966 33726761 PCT