Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01606 ATGGAGGGAGTGGTTTCTGTGCATAAGAACCAGCCAAGAATCTACTCTTTGCACACCACCAGATCATGGGAATTCGTGGGATTGGATAGACCTTTGAATCCATTGGAAGAAGACTCAAAACAGAAAAATAGAGACTTGCTAAGCAGAGCACAATATGGGAAAGATATCATAGTAGGAATGATTGATAGTGGTGTGTGGCCAGATTCAAGTAGCTTCAGTGATGAAGGGATGGGGCCTGTTCCAACAAAATGGAAAGGAGAATGTCAAAATGGAACTGCTTTCGATTCATCCCAGTGTAATAGGAAGATTATAGGAGCTCGTTACTACTTGCGTGGTTACGAGAGTGTATTTGGTCCTCTAAACGAAAAAGAGGACTACAAATCAGCACGTGACAAAGATGGTCATGGAACACACACAGCTTCAATAGTAGCAGGACGTGCAGTGGCGAATGCCTCAGCCCTTGGAGGCTTTGCCAAGGGCACAGCCCTAGGTGGGGCCCCTTTGGCCCGTCTTGCCATATACAAAGCATGTTGGCCCATAAAAGGACAGTCCAAAGACCAAGGGAACATATGCACAAACATTGACATGCTCAAAGCTATAGATGATGCCATTGGTGATGGCGTTGATGTTCTAAGCATTTCCATTGGGTTCAAAGAACCCATTTCTTATGAGGAGGATGTGATTGCCAGGGGTGCATTGCATGCTGTGAGGAACAACATTGTTGTAGCGTGCAGTGCAGGTAATGCTGGCCCTTCACCTCAAACTTTGTCAAATCCTGCACCATGGATCATCACGGTTGGTGCCAGCACTGTAGATAGGTCTTTTCTTGCTCTTGTTAAGCTCACCAATGGCACAATCATTGAGGGTCGATCAATTACCCCAGTTCACATGGGAAAGAACTATTACCCATTGGTTCTAGCTAAAGATGTTGAACTTCCAGGCCTGCCTAGTAATAATTCTGGGTATTGCTTGGACAATAGCCTTGAACCTAACAGGACAATGGGGAAGATAGTTATCTGCCTCAGAGGGCAAGGTCAAAGGTTATATAAAGGCTTAGAAGTTCAAAGGGCAGGGGGGATTGGTCTTATCCTTGGGAACAATAAACTAAATGGAAATGATGTACCCTCTGATCCTCATTTTATTCCAGCCACTGGACTGTCCTATGATAATGTCTTAAAACTCATTCACTATGTCCGTTCTACCCCAAATCCAATGGCACAAATTCTGCCAGGAACAACAGTGTTAAAAACCACACCAGCACCCTACATGGCCTCTTTCTCTAGCAGGGGTCCAAATATAATTGACCCCAATATTCTCAAGCCTGATATTACAGCCCCAGGAGTAGACATATTAGCAGCATGGACCGCGGAAGATGGTCCCACACGAATGACATTTAACGACAAACGAGTGGTTAAGTACAACATCTTCTCTGGAACTTCAATGTCATGCCCTCATGTTGCTGCTGCAGCTGTTCTTCTCAAAGCCATACACCCTACATGGACCACTGCTGCTATAAGATCTGCCCTCATAACTACAGCCAAGCCAACGGACAACACTGGCCATCCATTGATTGATGAAGCTGGAAATCTTGCAACTCCTTTTGCAATGGGATCGGGCCACTTCAACCCCAAAAAAGCAGCAGATCCTGGTCTAGTTTATGATGCCTCCTACATGGACTACCTTCTTTACACTTGTAAACTTGGAGTAGCTAAAAACCTCAACATTACATATAACTGTCCAAAGTCATTTCTTGAACCCTTTGAACTCAACTATCCATCCATACAAGTCCATGGACTCAATTACTCTAGGACTATTAAGAGGATAGTCACCAATGTTGGTAGAAGCAGGAGTATTTACAAGTTTAGTGCCTCGTCACCAAAGGAATTCTCCATCTCAGCCACTCCAGATACTCTTACATTTAATCATGTTGGGCAGAAAATGAACTTCATCATCACAGTGACAGCAAACTTGAGTCAGATACCAACCAACCATGGCCCAGATAAGTACTACTTTGGTTGGTATGCATGGACTCGAAAACATAACGTTGTAAGAAGCCCCGTGGCAGTGTCTTTTATATAG 2079 0.4425 MEGVVSVHKNQPRIYSLHTTRSWEFVGLDRPLNPLEEDSKQKNRDLLSRAQYGKDIIVGMIDSGVWPDSSSFSDEGMGPVPTKWKGECQNGTAFDSSQCNRKIIGARYYLRGYESVFGPLNEKEDYKSARDKDGHGTHTASIVAGRAVANASALGGFAKGTALGGAPLARLAIYKACWPIKGQSKDQGNICTNIDMLKAIDDAIGDGVDVLSISIGFKEPISYEEDVIARGALHAVRNNIVVACSAGNAGPSPQTLSNPAPWIITVGASTVDRSFLALVKLTNGTIIEGRSITPVHMGKNYYPLVLAKDVELPGLPSNNSGYCLDNSLEPNRTMGKIVICLRGQGQRLYKGLEVQRAGGIGLILGNNKLNGNDVPSDPHFIPATGLSYDNVLKLIHYVRSTPNPMAQILPGTTVLKTTPAPYMASFSSRGPNIIDPNILKPDITAPGVDILAAWTAEDGPTRMTFNDKRVVKYNIFSGTSMSCPHVAAAAVLLKAIHPTWTTAAIRSALITTAKPTDNTGHPLIDEAGNLATPFAMGSGHFNPKKAADPGLVYDASYMDYLLYTCKLGVAKNLNITYNCPKSFLEPFELNYPSIQVHGLNYSRTIKRIVTNVGRSRSIYKFSASSPKEFSISATPDTLTFNHVGQKMNFIITVTANLSQIPTNHGPDKYYFGWYAWTRKHNVVRSPVAVSFI 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01606 692 Pfam Fibronectin type-III domain 588 689 IPR041469 -
Vian6g01606 692 CDD PA_subtilisin_like 279 408 - -
Vian6g01606 692 ProSitePatterns Serine proteases, subtilase family, serine active site. 478 488 IPR023828 -
Vian6g01606 692 Pfam PA domain 323 393 IPR003137 -
Vian6g01606 692 Pfam Subtilase family 53 518 IPR000209 GO:0006508|GO:0008236
Vian6g01606 692 Gene3D - 564 691 - -
Vian6g01606 692 CDD Peptidases_S8_3 15 513 IPR034197 -
Vian6g01606 692 SUPERFAMILY Subtilisin-like 19 551 IPR036852 GO:0004252|GO:0006508
Vian6g01606 692 FunFam subtilisin-like protease SBT1.5 272 415 - -
Vian6g01606 692 Gene3D - 272 415 - -
Vian6g01606 692 ProSiteProfiles Serine proteases, subtilase domain profile. 22 547 - -
Vian6g01606 692 Gene3D Peptidase S8/S53 domain 55 560 IPR036852 GO:0004252|GO:0006508
Vian6g01606 692 PRINTS Subtilisin serine protease family (S8) signature 477 493 IPR015500 -
Vian6g01606 692 PRINTS Subtilisin serine protease family (S8) signature 131 144 IPR015500 -
Vian6g01606 692 PRINTS Subtilisin serine protease family (S8) signature 53 72 IPR015500 -
Vian6g01606 692 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 2 689 IPR045051 -
Vian6g01606 692 FunFam Subtilisin-like protease SBT1.5 55 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01606 Vian-Chr6 33629456 33635238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01606 4 691 Subtilisin-like Serine Gene Family AT5G45650 56.571 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01606 - - gmx:100793064 1219.14