Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01595 ATGGCACACAACACCGACGGGTTACCTTCTTCTACGTCTGTTCAACACCATGACAAAGACAAAGACAAAGCCAACCAGAAGGTTCCCTTCTACAAGCTATTCACTTTTGCAGATCACCTTGACGAGGCCTTGATGACCATTGGCACAATCTGTGCCATGGCTAATGGCTGGTCGCAGCCTATTATGACTGTCATTTTAGGAAAGCTTATCAACACTTTTGGCTCCACCGATCCATCAAATACCATCAAAGAGGTTTCCAAGGTTTCTTTATTGTTTGTATACTTGGCTATTGCTACTGGAGTTGCCTCGTTTCTTCGAGAAAGACAAGCCGCGAGGATTCGAGGTTTGTACTTGAAAACTATATTGAAGCAGGATATTGCTTTCTTTGACACTGAGACAACAACTGGTGAGGTTATTGGGAGAATGTCTGGTGACACCATTCTCATTCAAGATTCCATGGTAGAAAAGGTATCGATGGCGACTTGCTGTTATTTTGATCGCATGTATACCATGTGTGGAATTCTGTCCATTGTGATGAGTAGAATGTCAAGTCGTGGGCAAGCTGCTTACGCAGGAACTGTAGTTGAACAAACAGTGGCATCTTTCACTGGTGAGAGAAAAGCAATAGAAAAGTATAATATGAAGTTAAAAATTGCTTATAAAACTATGATTCAACAAGGGATGGCCTCTGGGTTAGGACTGGGGGTACTTTTGTTGATTGTCTTCTGCCCCTATGCACTTGCCATGTGGTATGGTTCTAAACTGGTTATTGAGAAAGGATTCAATGGTGGAACCGTCATCACTGTAATAGTGGCTCTTATGACTGGTGGAATGTCACTTGGTCAAACATCTCCTAGCCTAAACGCATTTGCCGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCAAAAATTGATGCTTATGACACCAATGGTGTTGTCATGGAAGACATAAGGGGAGATATTGAACTCAGGGATGTTTACTTTAGCTACCCTGCAAGGAAAAATGTGCAGATCTTCTCTGGATTCTCATTACATGTTTCCAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGCGGAAGTGGAAAGTCTACTGTGATAAGTTTATTGGAAAGATTCTATGATCCTGATTCTGGAGAAGTACTGATAGATGGCGTCAATTTGAAGGATTTTCAAGTTAGATGGATAAGAGAACAAATCGGGCTGGTTAGTCAAGAACCTATCCTGTTTGCAGCAAGTATCAAAGAGAACATAATCTATGGAAAAGAAGGTGCAACTGATGAGGAAATTAAGTCAGCAATAACACTTGCCAATGCCAAGACGTTCATTGACAAGCTGCCTCAGGGCCTTGAGACAATGGCAGGCCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAGAGAATTGCAATTGCAAGGGCAATTTTAAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACTAGTGCATTAGATGCCGAGTCCGAACGTGTTGTTCAAGAAGCATTAGAACGAGCCATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGCTTGACAACAATCAGAAATGCTGACAGCATAGCGGTGGTTCATCAAGGAAAAATTGTGGAGAAAGGAACTCATGATGAGTTAATCAAGGAGGTTGATGGTGCTTATTCTCAGCTTATTCGCCTACAGGAAGGAACTAAGGAAGCTGAGGGTAGCCATAATTCTGAAGCAGAGAAGTCAAATAACAATGTTAATTTTGATAATCACACAGCCAGATCTTCCACCCAGAGAGAAGTTTCATTAGGTAGAGATTCATCAAGTAGACATTACGAGTCACATAGCTTTGCTCTTTCTCATCGAAGTGGGGTACATGAATCTGTAGAAGTAGAAGATGAAGATGGGGATGTTGAAAAAAATAAAGTTGATGCTAAGAAGCCCATAAAGGTTTCTTTGAGACGTTTGGCCTACTTAAACAAGCCTGAAGTTCCTGTCTTAGTGCTTGGATCCGTTGCTGCAATAATACATGGTCTTGTGTTCCCTATTTTTGGCTTCTTGTTTTCCTCAGCAATAACTATGTTCTTTGAACCTCCAGAAAAACAGCGGAAAGATTCTAGGTTCTGGGCACTTCTATATATGGGTTTGGGTTTAATTACTCTTGTGGTCATACCTGTGCAAAATTACTTCTTTGGCGTTGCTGGAGGAAAATTAATAGAAAGAATTCGTTCACTGACATTTGAAAGGGTGGTCCATCAAGAAATCAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGGGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTAGTTGGTGACACATTAGCCCTCATTGTGCAAAACTTATCAACAATCATAGCTGGTCTAGTTATATCATTCACTGCTAATTGGATTCTTGCATTCATAATTCTGGCCGTGTCACCCTTGGTCCTTATGCAAGGATTTCTTCAGATGAAGTTTCTTAAAGGATTCAGTGCAGATGCCAAGGTAGAGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATCAGAACTATCGCATCATTCTGTGCCGAATCGAAGGTGATGGATATGTACCGAAAGAAATGTTTAGAGCCGGAAAAACAAGGTGTTCGGTTAGGGCTTGTGAGTGGTGCAGGATTTGGTTTCTCTTTTCTGGCTCTATACTGCACAAATGCTTTTTGTTTCTATATAGGATCTGTTCTTGTGCAACATGGGAAAGCAACTTTTCCAGAGGTTTTCAAGGTCTTCTTTTGTTTAACCATCACAGCAATAGGCGTTTCTCAGACTAGTGCCTTGGCACCAGACACCAACAAAGCCAAAGATTCCGCAGCATCAATATTTAACATTCTTGACAGTACACCTACCATTGACTCCAGCAGCAATGAGGGTAGAACACTAGAAGCCATTGCTGGTGATATTGATTTTGAACACGTCAGTTTTAGTTATCCAACTAGGCCTCATATTCAAATTCTCAAAGATTTGTGTCTAATCATTCCAGCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTCACACTGGACATATACTACTGGATGGAGTGGATATAAAAGAGTTCAGACTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAACCTATTCTCTTCAATGAAAGCATTCGTGCCAACATAGCATATGGCAAAGAAGGAGTTGCCACAGAGGAAGAGATAAGTGCAGCAGCCAAAGCATCCAATGCACACCAATTCATATGTGCTCTTCCCCAAGGCTATGACACCCCTGTTGGAGAAAGAGGAACACAATTGTCAGGAGGACAAAAGCAGCGGATAGCCATTGCAAGAGCCATGCTGAAAGATCCCAAAATCCTCTTGCTTGATGAGGCAACTAGTGCACTTGATGCCGAGTCAGAGAAAGTAGTTCAAGAGGCTCTAGATAGAGTGAGTGTGAATAGAACTACAGTAGTAGTAGCTCACCGTCTTACAACAATTAGAGGGGCTGATATAATAGCTGTAATGAAAGATGGAGCGGTAGCTGAAAAGGGAAAACATAATGAGTTGATGAAGATTATCAATGGAGTCTATGCATCATTGGTTGCTCTACATACGACTACATAG 3696 0.4183 MAHNTDGLPSSTSVQHHDKDKDKANQKVPFYKLFTFADHLDEALMTIGTICAMANGWSQPIMTVILGKLINTFGSTDPSNTIKEVSKVSLLFVYLAIATGVASFLRERQAARIRGLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDSMVEKVSMATCCYFDRMYTMCGILSIVMSRMSSRGQAAYAGTVVEQTVASFTGERKAIEKYNMKLKIAYKTMIQQGMASGLGLGVLLLIVFCPYALAMWYGSKLVIEKGFNGGTVITVIVALMTGGMSLGQTSPSLNAFAAGQAAAYKMFETIKRKPKIDAYDTNGVVMEDIRGDIELRDVYFSYPARKNVQIFSGFSLHVSSGTTAALVGQSGSGKSTVISLLERFYDPDSGEVLIDGVNLKDFQVRWIREQIGLVSQEPILFAASIKENIIYGKEGATDEEIKSAITLANAKTFIDKLPQGLETMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALERAMSKRTTVVVAHRLTTIRNADSIAVVHQGKIVEKGTHDELIKEVDGAYSQLIRLQEGTKEAEGSHNSEAEKSNNNVNFDNHTARSSTQREVSLGRDSSSRHYESHSFALSHRSGVHESVEVEDEDGDVEKNKVDAKKPIKVSLRRLAYLNKPEVPVLVLGSVAAIIHGLVFPIFGFLFSSAITMFFEPPEKQRKDSRFWALLYMGLGLITLVVIPVQNYFFGVAGGKLIERIRSLTFERVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNLSTIIAGLVISFTANWILAFIILAVSPLVLMQGFLQMKFLKGFSADAKVEYEEASQVANDAVGSIRTIASFCAESKVMDMYRKKCLEPEKQGVRLGLVSGAGFGFSFLALYCTNAFCFYIGSVLVQHGKATFPEVFKVFFCLTITAIGVSQTSALAPDTNKAKDSAASIFNILDSTPTIDSSSNEGRTLEAIAGDIDFEHVSFSYPTRPHIQILKDLCLIIPAGKTVALVGESGSGKSTVISLLERFYNPHTGHILLDGVDIKEFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGVATEEEISAAAKASNAHQFICALPQGYDTPVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESEKVVQEALDRVSVNRTTVVVAHRLTTIRGADIIAVMKDGAVAEKGKHNELMKIINGVYASLVALHTTT 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01595 1231 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 989 1226 IPR003439 GO:0005524
Vian6g01595 1231 MobiDBLite consensus disorder prediction 578 603 - -
Vian6g01595 1231 FunFam ABC transporter B family member 1 979 1229 - -
Vian6g01595 1231 SUPERFAMILY ABC transporter transmembrane region 648 973 IPR036640 GO:0005524|GO:0016020
Vian6g01595 1231 CDD ABC_6TM_Pgp_ABCB1_D2_like 657 972 - -
Vian6g01595 1231 Pfam ABC transporter 1007 1157 IPR003439 GO:0005524
Vian6g01595 1231 FunFam ABC transporter B family member 1 317 566 - -
Vian6g01595 1231 CDD ABC_MTABC3_MDL1_MDL2 327 565 - -
Vian6g01595 1231 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 327 563 IPR003439 GO:0005524
Vian6g01595 1231 ProSitePatterns ABC transporters family signature. 1129 1143 IPR017871 GO:0005524|GO:0016887
Vian6g01595 1231 PANTHER ABC TRANSPORTER B FAMILY 630 1227 IPR039421 -
Vian6g01595 1231 Gene3D ABC transporter type 1, transmembrane domain 171 585 IPR036640 GO:0005524|GO:0016020
Vian6g01595 1231 FunFam ABC transporter B family member 1 647 955 - -
Vian6g01595 1231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 565 IPR027417 -
Vian6g01595 1231 SMART AAA_5 354 540 IPR003593 GO:0016887
Vian6g01595 1231 SMART AAA_5 1016 1203 IPR003593 GO:0016887
Vian6g01595 1231 Gene3D ABC transporter type 1, transmembrane domain 16 106 IPR036640 GO:0005524|GO:0016020
Vian6g01595 1231 SUPERFAMILY ABC transporter transmembrane region 32 311 IPR036640 GO:0005524|GO:0016020
Vian6g01595 1231 CDD ABC_MTABC3_MDL1_MDL2 989 1225 - -
Vian6g01595 1231 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 668 954 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g01595 1231 Gene3D - 979 1229 IPR027417 -
Vian6g01595 1231 Gene3D - 317 566 IPR027417 -
Vian6g01595 1231 Gene3D - 635 646 IPR027417 -
Vian6g01595 1231 MobiDBLite consensus disorder prediction 567 640 - -
Vian6g01595 1231 MobiDBLite consensus disorder prediction 625 640 - -
Vian6g01595 1231 ProSitePatterns ABC transporters family signature. 466 480 IPR017871 GO:0005524|GO:0016887
Vian6g01595 1231 CDD ABC_6TM_Pgp_ABCB1_D1_like 45 288 - -
Vian6g01595 1231 Gene3D ABC transporter type 1, transmembrane domain 647 955 IPR036640 GO:0005524|GO:0016020
Vian6g01595 1231 Gene3D ABC transporter type 1, transmembrane domain 956 978 IPR036640 GO:0005524|GO:0016020
Vian6g01595 1231 MobiDBLite consensus disorder prediction 1 21 - -
Vian6g01595 1231 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 292 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g01595 1231 Pfam ABC transporter transmembrane region 668 939 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g01595 1231 Pfam ABC transporter transmembrane region 197 276 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g01595 1231 Pfam ABC transporter transmembrane region 45 160 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g01595 1231 Pfam ABC transporter 347 494 IPR003439 GO:0005524
Vian6g01595 1231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 979 1227 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01595 Vian-Chr6 33550774 33555941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01595 4 1231 Calmodulin-binding Proteins AT2G36910 42.151 0.0 960