Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian6g01595 | ATGGCACACAACACCGACGGGTTACCTTCTTCTACGTCTGTTCAACACCATGACAAAGACAAAGACAAAGCCAACCAGAAGGTTCCCTTCTACAAGCTATTCACTTTTGCAGATCACCTTGACGAGGCCTTGATGACCATTGGCACAATCTGTGCCATGGCTAATGGCTGGTCGCAGCCTATTATGACTGTCATTTTAGGAAAGCTTATCAACACTTTTGGCTCCACCGATCCATCAAATACCATCAAAGAGGTTTCCAAGGTTTCTTTATTGTTTGTATACTTGGCTATTGCTACTGGAGTTGCCTCGTTTCTTCGAGAAAGACAAGCCGCGAGGATTCGAGGTTTGTACTTGAAAACTATATTGAAGCAGGATATTGCTTTCTTTGACACTGAGACAACAACTGGTGAGGTTATTGGGAGAATGTCTGGTGACACCATTCTCATTCAAGATTCCATGGTAGAAAAGGTATCGATGGCGACTTGCTGTTATTTTGATCGCATGTATACCATGTGTGGAATTCTGTCCATTGTGATGAGTAGAATGTCAAGTCGTGGGCAAGCTGCTTACGCAGGAACTGTAGTTGAACAAACAGTGGCATCTTTCACTGGTGAGAGAAAAGCAATAGAAAAGTATAATATGAAGTTAAAAATTGCTTATAAAACTATGATTCAACAAGGGATGGCCTCTGGGTTAGGACTGGGGGTACTTTTGTTGATTGTCTTCTGCCCCTATGCACTTGCCATGTGGTATGGTTCTAAACTGGTTATTGAGAAAGGATTCAATGGTGGAACCGTCATCACTGTAATAGTGGCTCTTATGACTGGTGGAATGTCACTTGGTCAAACATCTCCTAGCCTAAACGCATTTGCCGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCAAAAATTGATGCTTATGACACCAATGGTGTTGTCATGGAAGACATAAGGGGAGATATTGAACTCAGGGATGTTTACTTTAGCTACCCTGCAAGGAAAAATGTGCAGATCTTCTCTGGATTCTCATTACATGTTTCCAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGCGGAAGTGGAAAGTCTACTGTGATAAGTTTATTGGAAAGATTCTATGATCCTGATTCTGGAGAAGTACTGATAGATGGCGTCAATTTGAAGGATTTTCAAGTTAGATGGATAAGAGAACAAATCGGGCTGGTTAGTCAAGAACCTATCCTGTTTGCAGCAAGTATCAAAGAGAACATAATCTATGGAAAAGAAGGTGCAACTGATGAGGAAATTAAGTCAGCAATAACACTTGCCAATGCCAAGACGTTCATTGACAAGCTGCCTCAGGGCCTTGAGACAATGGCAGGCCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAGAGAATTGCAATTGCAAGGGCAATTTTAAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACTAGTGCATTAGATGCCGAGTCCGAACGTGTTGTTCAAGAAGCATTAGAACGAGCCATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGCTTGACAACAATCAGAAATGCTGACAGCATAGCGGTGGTTCATCAAGGAAAAATTGTGGAGAAAGGAACTCATGATGAGTTAATCAAGGAGGTTGATGGTGCTTATTCTCAGCTTATTCGCCTACAGGAAGGAACTAAGGAAGCTGAGGGTAGCCATAATTCTGAAGCAGAGAAGTCAAATAACAATGTTAATTTTGATAATCACACAGCCAGATCTTCCACCCAGAGAGAAGTTTCATTAGGTAGAGATTCATCAAGTAGACATTACGAGTCACATAGCTTTGCTCTTTCTCATCGAAGTGGGGTACATGAATCTGTAGAAGTAGAAGATGAAGATGGGGATGTTGAAAAAAATAAAGTTGATGCTAAGAAGCCCATAAAGGTTTCTTTGAGACGTTTGGCCTACTTAAACAAGCCTGAAGTTCCTGTCTTAGTGCTTGGATCCGTTGCTGCAATAATACATGGTCTTGTGTTCCCTATTTTTGGCTTCTTGTTTTCCTCAGCAATAACTATGTTCTTTGAACCTCCAGAAAAACAGCGGAAAGATTCTAGGTTCTGGGCACTTCTATATATGGGTTTGGGTTTAATTACTCTTGTGGTCATACCTGTGCAAAATTACTTCTTTGGCGTTGCTGGAGGAAAATTAATAGAAAGAATTCGTTCACTGACATTTGAAAGGGTGGTCCATCAAGAAATCAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGGGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTAGTTGGTGACACATTAGCCCTCATTGTGCAAAACTTATCAACAATCATAGCTGGTCTAGTTATATCATTCACTGCTAATTGGATTCTTGCATTCATAATTCTGGCCGTGTCACCCTTGGTCCTTATGCAAGGATTTCTTCAGATGAAGTTTCTTAAAGGATTCAGTGCAGATGCCAAGGTAGAGTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATCAGAACTATCGCATCATTCTGTGCCGAATCGAAGGTGATGGATATGTACCGAAAGAAATGTTTAGAGCCGGAAAAACAAGGTGTTCGGTTAGGGCTTGTGAGTGGTGCAGGATTTGGTTTCTCTTTTCTGGCTCTATACTGCACAAATGCTTTTTGTTTCTATATAGGATCTGTTCTTGTGCAACATGGGAAAGCAACTTTTCCAGAGGTTTTCAAGGTCTTCTTTTGTTTAACCATCACAGCAATAGGCGTTTCTCAGACTAGTGCCTTGGCACCAGACACCAACAAAGCCAAAGATTCCGCAGCATCAATATTTAACATTCTTGACAGTACACCTACCATTGACTCCAGCAGCAATGAGGGTAGAACACTAGAAGCCATTGCTGGTGATATTGATTTTGAACACGTCAGTTTTAGTTATCCAACTAGGCCTCATATTCAAATTCTCAAAGATTTGTGTCTAATCATTCCAGCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTCACACTGGACATATACTACTGGATGGAGTGGATATAAAAGAGTTCAGACTAAGCTGGTTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAACCTATTCTCTTCAATGAAAGCATTCGTGCCAACATAGCATATGGCAAAGAAGGAGTTGCCACAGAGGAAGAGATAAGTGCAGCAGCCAAAGCATCCAATGCACACCAATTCATATGTGCTCTTCCCCAAGGCTATGACACCCCTGTTGGAGAAAGAGGAACACAATTGTCAGGAGGACAAAAGCAGCGGATAGCCATTGCAAGAGCCATGCTGAAAGATCCCAAAATCCTCTTGCTTGATGAGGCAACTAGTGCACTTGATGCCGAGTCAGAGAAAGTAGTTCAAGAGGCTCTAGATAGAGTGAGTGTGAATAGAACTACAGTAGTAGTAGCTCACCGTCTTACAACAATTAGAGGGGCTGATATAATAGCTGTAATGAAAGATGGAGCGGTAGCTGAAAAGGGAAAACATAATGAGTTGATGAAGATTATCAATGGAGTCTATGCATCATTGGTTGCTCTACATACGACTACATAG | 3696 | 0.4183 | MAHNTDGLPSSTSVQHHDKDKDKANQKVPFYKLFTFADHLDEALMTIGTICAMANGWSQPIMTVILGKLINTFGSTDPSNTIKEVSKVSLLFVYLAIATGVASFLRERQAARIRGLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDSMVEKVSMATCCYFDRMYTMCGILSIVMSRMSSRGQAAYAGTVVEQTVASFTGERKAIEKYNMKLKIAYKTMIQQGMASGLGLGVLLLIVFCPYALAMWYGSKLVIEKGFNGGTVITVIVALMTGGMSLGQTSPSLNAFAAGQAAAYKMFETIKRKPKIDAYDTNGVVMEDIRGDIELRDVYFSYPARKNVQIFSGFSLHVSSGTTAALVGQSGSGKSTVISLLERFYDPDSGEVLIDGVNLKDFQVRWIREQIGLVSQEPILFAASIKENIIYGKEGATDEEIKSAITLANAKTFIDKLPQGLETMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALERAMSKRTTVVVAHRLTTIRNADSIAVVHQGKIVEKGTHDELIKEVDGAYSQLIRLQEGTKEAEGSHNSEAEKSNNNVNFDNHTARSSTQREVSLGRDSSSRHYESHSFALSHRSGVHESVEVEDEDGDVEKNKVDAKKPIKVSLRRLAYLNKPEVPVLVLGSVAAIIHGLVFPIFGFLFSSAITMFFEPPEKQRKDSRFWALLYMGLGLITLVVIPVQNYFFGVAGGKLIERIRSLTFERVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLALIVQNLSTIIAGLVISFTANWILAFIILAVSPLVLMQGFLQMKFLKGFSADAKVEYEEASQVANDAVGSIRTIASFCAESKVMDMYRKKCLEPEKQGVRLGLVSGAGFGFSFLALYCTNAFCFYIGSVLVQHGKATFPEVFKVFFCLTITAIGVSQTSALAPDTNKAKDSAASIFNILDSTPTIDSSSNEGRTLEAIAGDIDFEHVSFSYPTRPHIQILKDLCLIIPAGKTVALVGESGSGKSTVISLLERFYNPHTGHILLDGVDIKEFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGVATEEEISAAAKASNAHQFICALPQGYDTPVGERGTQLSGGQKQRIAIARAMLKDPKILLLDEATSALDAESEKVVQEALDRVSVNRTTVVVAHRLTTIRGADIIAVMKDGAVAEKGKHNELMKIINGVYASLVALHTTT | 1231 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian6g01595 | 1231 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 989 | 1226 | IPR003439 | GO:0005524 | |
Vian6g01595 | 1231 | MobiDBLite | consensus disorder prediction | 578 | 603 | - | - | |
Vian6g01595 | 1231 | FunFam | ABC transporter B family member 1 | 979 | 1229 | - | - | |
Vian6g01595 | 1231 | SUPERFAMILY | ABC transporter transmembrane region | 648 | 973 | IPR036640 | GO:0005524|GO:0016020 | |
Vian6g01595 | 1231 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 657 | 972 | - | - | |
Vian6g01595 | 1231 | Pfam | ABC transporter | 1007 | 1157 | IPR003439 | GO:0005524 | |
Vian6g01595 | 1231 | FunFam | ABC transporter B family member 1 | 317 | 566 | - | - | |
Vian6g01595 | 1231 | CDD | ABC_MTABC3_MDL1_MDL2 | 327 | 565 | - | - | |
Vian6g01595 | 1231 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 327 | 563 | IPR003439 | GO:0005524 | |
Vian6g01595 | 1231 | ProSitePatterns | ABC transporters family signature. | 1129 | 1143 | IPR017871 | GO:0005524|GO:0016887 | |
Vian6g01595 | 1231 | PANTHER | ABC TRANSPORTER B FAMILY | 630 | 1227 | IPR039421 | - | |
Vian6g01595 | 1231 | Gene3D | ABC transporter type 1, transmembrane domain | 171 | 585 | IPR036640 | GO:0005524|GO:0016020 | |
Vian6g01595 | 1231 | FunFam | ABC transporter B family member 1 | 647 | 955 | - | - | |
Vian6g01595 | 1231 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 316 | 565 | IPR027417 | - | |
Vian6g01595 | 1231 | SMART | AAA_5 | 354 | 540 | IPR003593 | GO:0016887 | |
Vian6g01595 | 1231 | SMART | AAA_5 | 1016 | 1203 | IPR003593 | GO:0016887 | |
Vian6g01595 | 1231 | Gene3D | ABC transporter type 1, transmembrane domain | 16 | 106 | IPR036640 | GO:0005524|GO:0016020 | |
Vian6g01595 | 1231 | SUPERFAMILY | ABC transporter transmembrane region | 32 | 311 | IPR036640 | GO:0005524|GO:0016020 | |
Vian6g01595 | 1231 | CDD | ABC_MTABC3_MDL1_MDL2 | 989 | 1225 | - | - | |
Vian6g01595 | 1231 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 668 | 954 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vian6g01595 | 1231 | Gene3D | - | 979 | 1229 | IPR027417 | - | |
Vian6g01595 | 1231 | Gene3D | - | 317 | 566 | IPR027417 | - | |
Vian6g01595 | 1231 | Gene3D | - | 635 | 646 | IPR027417 | - | |
Vian6g01595 | 1231 | MobiDBLite | consensus disorder prediction | 567 | 640 | - | - | |
Vian6g01595 | 1231 | MobiDBLite | consensus disorder prediction | 625 | 640 | - | - | |
Vian6g01595 | 1231 | ProSitePatterns | ABC transporters family signature. | 466 | 480 | IPR017871 | GO:0005524|GO:0016887 | |
Vian6g01595 | 1231 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 45 | 288 | - | - | |
Vian6g01595 | 1231 | Gene3D | ABC transporter type 1, transmembrane domain | 647 | 955 | IPR036640 | GO:0005524|GO:0016020 | |
Vian6g01595 | 1231 | Gene3D | ABC transporter type 1, transmembrane domain | 956 | 978 | IPR036640 | GO:0005524|GO:0016020 | |
Vian6g01595 | 1231 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Vian6g01595 | 1231 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 47 | 292 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vian6g01595 | 1231 | Pfam | ABC transporter transmembrane region | 668 | 939 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vian6g01595 | 1231 | Pfam | ABC transporter transmembrane region | 197 | 276 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vian6g01595 | 1231 | Pfam | ABC transporter transmembrane region | 45 | 160 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vian6g01595 | 1231 | Pfam | ABC transporter | 347 | 494 | IPR003439 | GO:0005524 | |
Vian6g01595 | 1231 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 979 | 1227 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian6g01595 | Vian-Chr6 | 33550774 | 33555941 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian6g01595 | 4 | 1231 | Calmodulin-binding Proteins | AT2G36910 | 42.151 | 0.0 | 960 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian6g01595 | K05658 | - | gmx:100801771 | 1959.88 |