Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01589 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCTCCCCAGGAAGGGGAAAGGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGTAGCCGCGTGGTATACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTGTCTACCAACAAGGAAGTGGATGCTCATATCCCAAACTACCCAAGCTTGCCTCCTCAACTCATTTGTCAACTTCATAACATGACTATGCATGCTGATGCAGAGACTGACGAAGTGTATGCTCAGATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCGGAATTGGGCACTCCTAGTAAACAGCCCACAAACTATTTCTGCAAAACATTGACTGCAAGTGACACAAGCACGCATGGGGGATTCTCTGTACCTCGCCGTGCAGCTGAAAAAGTGTTCCCTGCATTGGATTTTTCTCAGCAGCCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGCGGCCAGCCCAAAAGGCATCTACTTACAACTGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAGCTTCTTCTTGGGATCCGTCGTGCTAATAGACCACAAACTGTGATGCCTTCATCAGTGTTGTCTAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGGTTCACCATTTTCTATAATCCACGTGCTAGCCCATCAGAATTTGTCATACCCTTAGCGAAATATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGGTTCAGGATGCTGTTTGAAACTGAGGAATCAAGTGTACGACGATACATGGGTACAATAACTGGCATTAGTGACCTGGATTCTGCCCGGTGGCCAAACTCACACTGGCGCTCAGTTAAGGTTGGCTGGGATGAATCTACTGCTGGAGAGAGACAACCTAGAGTGTCTCTATGGGAAATTGAGCCATTAACTACGTTTCCTATGTATCCATCTCCATTCCCCCTTAGGCTTAAACGACAATGGCCTCCTGGACTTCCTTCATTCCATGGCATGAAGGATGATGATTTTGGCCTGAATTCATCTCTCTTGTGGCTCCGAGATGGTGATAGGGGGCTTCAGTCTCCTACTTTTCAGGGAATTGGTGTTAATCCTTGGATGCAGCCTAGATTTGATCCCTCCATGTTGAATATGCAAACAGATATGTATCAAGCTGCTGCTGCTGCTGTTCAGGAGATGAGGGGTTTGGATCCTTCCAAACAGCATTCTGCTTCCATACTTCAATTTCAACAACAGCAGAATTTCCCAAACAGGACAGCTGCTTTTGTGCAGGCCCAGATGGCGCAGCAGCCACAACATCAGCAGATTTTTGGAAATAATCAAGAGAATCAACATTCACCACAATCTCAGCTGCAAACTCAGGCTCATCTTCAGCAACATTTACAACATCAGCACTCATTCAATAGTCAGCATCATCATCAGCACCAGCAACAACTACGACAGACACAGCAGCAACAACAACAGCAACAAGTAGTAGATAATCAGCAAATTTCAAGTGCAGTTTCTTCAATGTCTCAGTTTGTTTCAGCTCCTCCACCTCAATCACCACCTATGCAAGCTATCTCTTCCTTGTGCCAACAGCAAAATTTTTCTGATTCGAATGGGAACTCTGGGCCTACTATTGTTTCTCCCCTTCACAGTATCTTGGGTTCATTTCCACAGGATGAAACAGCTCACCTACTGAACCTTCCCAGAACAAGCTCTTGGATTCCTGTTCAAAATTCAACTGGGTGGCCTTCAAAGCGTGTTGCGGTGGATGCTCTTCTTTCTACTGGAGTCTCTCAGTGTGTTCTACCTCAGGTGGAGCAGCTAGGGCAGCCCCAGAGTACTGTGTCTCAAAATGCTATTACTTTACCCCCTTTTCCTGGTAGGGAGTGCTCCATAGACCAAGAAGGGAGCAATGATCCTCAAAATCATCTCTTATTTGGTGTTAATATAGATTCATCATCCCTTCTCATGCCTAATGGAATGTCAACCCTTAAGGGGGTTAGCAGCAACAATGACTCCTCAACCATGCCATATCAATCTTCTAATTATCTGAATACCGCCACAGGGACTGGTTCTTCATTGAATCATGGAATAACGCCCAGTATTGGCGGTGAATCAGGTTACCTGCAGAGTCCAGAAAATGCTGGACAAGGAAACCCGCTGAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCACTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGAAGTGAACTTGCACAAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGATGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATAAAGATACTTTCTCCTCAGGAAGTGCAGCAAATGAGGAACTCCGGCCTTGAGCTCTTGAACTCGGTTCCAATTCAAAGGCTCTCTAATGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATTTAAGCACTGGAATAACAGCTGTGGGGTCTTTAGACTACTGA 2724 0.4585 MRLSSAGFSPPPQEGERRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPALDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRQWPPGLPSFHGMKDDDFGLNSSLLWLRDGDRGLQSPTFQGIGVNPWMQPRFDPSMLNMQTDMYQAAAAAVQEMRGLDPSKQHSASILQFQQQQNFPNRTAAFVQAQMAQQPQHQQIFGNNQENQHSPQSQLQTQAHLQQHLQHQHSFNSQHHHQHQQQLRQTQQQQQQQQVVDNQQISSAVSSMSQFVSAPPPQSPPMQAISSLCQQQNFSDSNGNSGPTIVSPLHSILGSFPQDETAHLLNLPRTSSWIPVQNSTGWPSKRVAVDALLSTGVSQCVLPQVEQLGQPQSTVSQNAITLPPFPGRECSIDQEGSNDPQNHLLFGVNIDSSSLLMPNGMSTLKGVSSNNDSSTMPYQSSNYLNTATGTGSSLNHGITPSIGGESGYLQSPENAGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRSELAQMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMRNSGLELLNSVPIQRLSNGICDDYVSRQDPRNLSTGITAVGSLDY 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01589 907 FunFam Auxin response factor 291 363 - -
Vian6g01589 907 FunFam Auxin response factor 770 863 - -
Vian6g01589 907 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Vian6g01589 907 MobiDBLite consensus disorder prediction 494 551 - -
Vian6g01589 907 Gene3D - 125 228 IPR015300 -
Vian6g01589 907 ProSiteProfiles PB1 domain profile. 774 858 IPR000270 GO:0005515
Vian6g01589 907 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vian6g01589 907 FunFam Auxin response factor 125 229 - -
Vian6g01589 907 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vian6g01589 907 Gene3D - 771 863 - -
Vian6g01589 907 Gene3D - 291 363 - -
Vian6g01589 907 MobiDBLite consensus disorder prediction 746 767 - -
Vian6g01589 907 Pfam AUX/IAA family 768 858 IPR033389 -
Vian6g01589 907 SUPERFAMILY CAD & PB1 domains 773 849 - -
Vian6g01589 907 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 863 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vian6g01589 907 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vian6g01589 907 SMART B3_2 127 229 IPR003340 GO:0003677
Vian6g01589 907 CDD B3_DNA 126 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01589 Vian-Chr6 33514327 33519953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01589 1 482 B3 DNA Binding Superfamily AT1G30330 85.451 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vian6g01589 AUX_IAA 3.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01589 - - gmx:100798719 1565.82