Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01580 ATGTTCTTTTATTACAGGGCTTGGGAGTTGGTACTGGTTGTTCTAGTCATATACTCAACTTGGATTTGCCCATTTGAGTTTGCCTTTCTGCCTTACAAGGAAGATGCTCTATTCATCATAGACAACATTGTCAATGGTTTCTTTGCAATTGACATAGTGTTGACATTCTTTGTAGCATACCTTGACCACCATTCTTATCTTCTTGTTGATGATTCGAAGAGGATTTCAATCAGATACCTATCTTCCTGGTTTGCTTTTGATGTCTGCTCAACAATACCGTTTCAGTCCTTTAGCTTCCTCTTCACGGATAGTGGCAGTGAGCTTGGCTTCAAAGTTTTTAACATGTTTCGGTTATGGCGTTTGAGACGAGTCAGTTCTCTGTTTGCAAGGCTTGAAAAGGACATTCGCTTCAATTATTTCTGGACTAGGTGCACAAAGCTCATCGCTGTGACCTTGTTTGCTGTGCACTGTGCGGGATGCTTTAACTATCTCATTGCAGATAGGTACCCAGATTCCAAAAGAACCTGGATTGGTGCTGTGTACCCAAATTTCAAAGAAGAAAGTCTTTGGGACAGATATGTCACAGCAATGTACTGGTCCATTGTCACTCTTACTACCACTGGTTATGGGGATTTACATGCTGAGAACACAAGAGAGATGTTGTTTGATATCGCTTACATGCTGTTCAACTTGGGTTTAACATCCTATATCATTGGAAACATGACTAACCTTGTAAGAGGATTGGTTTTGGTGCCGCAGAGAGACACAGTCAAAGCAGTTTCTGAATTTGCATCAAGAAATCATTTGCCCCATCGCATACAAGATCAGATGTTGTCACATATATGTTTGAGGTTTAAAACCGAAGAACTGAAGCAGCAAGAAACATTAAATGATCTTCCAAAGGCAATTCGTTCAAGCATTGCACACCATCTGTTTTTTCCTGTCGTGCAAAAGGTCTACCTTTTCCAAGGAGTCTCACATGATTTCCTTTTCGAACTGATTTCAGATATCGAAGCTGAATATTTCCCACCCAAGGAAGATGTCATACTACAAAACGAGTCCTCCACGGAACTTTATGTGCTGGTTTCAGGGGCAGTGGATCTGGTTCGCTACATCGATGGGCATGATCATGTTCATGGGAAGGCAGTTGCAGTTGATGCGTTTGGAGAGATTGGAGTTTTGTATCAGATACCCCAGCCTTTCACAGTTCGTACAACAGAACTTTCTCAGATTTTAAGACTCAACAAAACATCCTTAATGAATGTTTTACAAGCAAATCCAGGAGACGCACAAATTATAATGGATAACCTTTTAATGAGGTTGAAGGGGCGTGAAGATTTTGGCTTTGAATTTCTTTGCACAGATTCTGGGCGGTTTACAAATGAACTGCTTCAAGGAGATCATACGATACGAAGCTCTTCTCACGAGTGTACAAATAATTCACATGAGCATTCATTAATGCGTGAAGGAGAGTGCATAGATATTAGAAAGTCTGAGATCAGTTTTCGTAATGTGACTAATGATGATGATTTAGTCACTAAACATAGCGTGATCCCCGAGCATGATACAGGAGAAGCTCGTGCCCCTGCACGCAAAGAGAATCTAGATGTTGTTGAAATTCTGCTGGAAAGAGAATCAAATCCTAACGCAAATTCCATAGGGTGGACACAAAATGCTCTAGCGAAACAGCCGAAAAACAAGAGCATTTGTGACCCAAAAAGGAGTCATGAAAAGGAGAAGTTGGATGAATTTAGAATAGAGATAGAGGAGCCAGAAATCCTCCTTGACAGGGATAGCTCAACGAGAAACAGAAGACATGGAGGTATTAGATCTATCAAGTATCCAAAAGAAAAAATAAGCACAAACTCCAATTCAAGAAATTCTAACTGTCCAAGTGATATCGATTCGGCAAGGCTTCCCAAGAAGAGAGTAACAATCCAGTTGCTACATGGATGCAGGAGTAGCTCACAGGGAAGCCACGGAAAATTAATAATCCTGCCCGATTCATTAGAAGAGCTGCTCAAAATTGCCGGTAAGCTTTTTGACTCAAAATAA 2055 0.4078 MFFYYRAWELVLVVLVIYSTWICPFEFAFLPYKEDALFIIDNIVNGFFAIDIVLTFFVAYLDHHSYLLVDDSKRISIRYLSSWFAFDVCSTIPFQSFSFLFTDSGSELGFKVFNMFRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLIAVTLFAVHCAGCFNYLIADRYPDSKRTWIGAVYPNFKEESLWDRYVTAMYWSIVTLTTTGYGDLHAENTREMLFDIAYMLFNLGLTSYIIGNMTNLVRGLVLVPQRDTVKAVSEFASRNHLPHRIQDQMLSHICLRFKTEELKQQETLNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLFELISDIEAEYFPPKEDVILQNESSTELYVLVSGAVDLVRYIDGHDHVHGKAVAVDAFGEIGVLYQIPQPFTVRTTELSQILRLNKTSLMNVLQANPGDAQIIMDNLLMRLKGREDFGFEFLCTDSGRFTNELLQGDHTIRSSSHECTNNSHEHSLMREGECIDIRKSEISFRNVTNDDDLVTKHSVIPEHDTGEARAPARKENLDVVEILLERESNPNANSIGWTQNALAKQPKNKSICDPKRSHEKEKLDEFRIEIEEPEILLDRDSSTRNRRHGGIRSIKYPKEKISTNSNSRNSNCPSDIDSARLPKKRVTIQLLHGCRSSSQGSHGKLIILPDSLEELLKIAGKLFDSK 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01580 684 PANTHER POTASSIUM CHANNEL AKT1 5 444 IPR045319 GO:0005249|GO:0006813
Vian6g01580 684 Pfam KHA, dimerisation domain of potassium ion channel 642 682 IPR021789 -
Vian6g01580 684 SUPERFAMILY Voltage-gated potassium channels 5 245 - -
Vian6g01580 684 SMART cnmp_10 321 438 IPR000595 -
Vian6g01580 684 FunFam Potassium channel KAT2 309 445 - -
Vian6g01580 684 Pfam Ion transport protein 6 243 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vian6g01580 684 Gene3D Jelly Rolls 288 450 IPR014710 -
Vian6g01580 684 Gene3D - 6 247 - -
Vian6g01580 684 PRINTS EAG/ELK/ERG potassium channel family signature 219 230 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian6g01580 684 PRINTS EAG/ELK/ERG potassium channel family signature 237 246 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian6g01580 684 PRINTS EAG/ELK/ERG potassium channel family signature 193 210 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian6g01580 684 PRINTS EAG/ELK/ERG potassium channel family signature 52 61 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian6g01580 684 PRINTS EAG/ELK/ERG potassium channel family signature 41 51 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian6g01580 684 ProSiteProfiles cAMP/cGMP binding motif profile. 321 440 IPR000595 -
Vian6g01580 684 CDD CAP_ED 321 434 IPR000595 -
Vian6g01580 684 FunFam Potassium channel KAT3 7 246 - -
Vian6g01580 684 Pfam Cyclic nucleotide-binding domain 341 425 IPR000595 -
Vian6g01580 684 SUPERFAMILY cAMP-binding domain-like 254 441 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01580 Vian-Chr6 33434748 33437885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01580 5 681 Ion Channels AT5G46240 56.112 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01580 K21867 - gmx:100811356 1135.17