Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01555 ATGGAAGAGGATGAGATTCAAGCACAGGCAGTGTGTAAGTTCCCTAGAGTTGGAAATGGACGGAGCGACCAATACCAAGAGGAGGAAGAAGAGGTAGACATAAGAAGAAGAGGTATTGGTGGCGGCGGCGGCGGTGGTGGTGGAGGAGGAGGAAGTGATGCCAGCACAAACCATTTCCAAAGCAGCTGGCACCACTCTTCGAGAATCATTAGGGTGTCTCGAGCATCTGGTGGCAAAGACAGGCACAGCAAGGTGATGACCTCAAAGGGGTTAAGAGACAGAAGGGTTAGGCTCTCGGTGACCACGGCCATTCAGTTCTACGACCTTCAAGATCGCTTGGGTTATGACCAGCCCAGTAAGGCTGTGGAGTGGTTAATCAATGCTGCTTCAGATGCTATCTCAGAGCTTCCTTCTCTCAACAACCCCTTCCCTGATACCCCTAAGCAGCCAAGTGACGAGAAAAGGCCAACCAGTGGTCAACGTGGGGTTCAACCACAGGCCTTTGATGATGCAGATGGAGACACCAATTTCCTCCACCAGAGCCAAAACCAAAGCCAGAACCTCTCTCTCTCCAAGTCTGCTTGCAGCAGCACTTCCGAGACAAGCAAGGGTTCGGGCTTGTCCCTCTCTAGGTCTGAGATCCGTGTGAACCGTGTGAAGGCAAGGGAGAGGGCAAGGGTAAGAGCTGCAAAAGATAAGGGAAAAGATAGGGACAAGGAGAAGGAGAAAGAGAAAGAAAACGAGTCTGGCATTGCACACCACCACCACCAACACCACAATGTAAACAACCCCAACCATATGTCTCACACTGCTTCCTTCACCGAGCTTCTCACCGGTGGGATTGGGAGCACAGTAACGGTTAATCCCACGACCACAGCAAGTCCTAATGGATCATCTGTTCATCAGATCCATGAAGGTCATGACGAGGCCAATATATTCAACAAGGGAAGACAACAACAACAACAACATTGGTCTTCGACAGTGACACCTATGGACTACTTCAGCCAAGGAGGCCTCTTGGTGGGACCTTCATCATCATCTGCAAGAACCCAACACCAACACCAACATCAATCTTCTTCAGGACAGTTCCAATTGGGACACGCCCTTCCCATCTCACCATTCAGTGGAGAAAACCACTCGGATCAGATGCAGCATTTTTCGTTCATGCCAGACCACCTTAACATGCCGGCCGTGGTGACTTCTTCTTCTTCTGCTTCTCAACCCAGCGGGGGTGACAATTACAACCTCAACTTCAGCATCTCTTCGGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCCTTTTTGCCTCACCTCCAGAGGTTTCAACCTTTAGACGGATCATCCAATCTACCTTTCTTCATCGGAGCTCCCGCTCCTTCTTCTGCTCCTCCAACCATTGACAGCAACAACAATAACAACCACCACCACCTTCAGTTCTCTCCCGTCTTCGATGGCCGCTTGCAACTTTGCTATGGCGACGGAACAAGGCATTCTGACCACAAGGGCAAGGGAAAGAACTAA 1536 0.5059 MEEDEIQAQAVCKFPRVGNGRSDQYQEEEEEVDIRRRGIGGGGGGGGGGGGSDASTNHFQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDAISELPSLNNPFPDTPKQPSDEKRPTSGQRGVQPQAFDDADGDTNFLHQSQNQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARVRAAKDKGKDRDKEKEKEKENESGIAHHHHQHHNVNNPNHMSHTASFTELLTGGIGSTVTVNPTTTASPNGSSVHQIHEGHDEANIFNKGRQQQQQHWSSTVTPMDYFSQGGLLVGPSSSSARTQHQHQHQSSSGQFQLGHALPISPFSGENHSDQMQHFSFMPDHLNMPAVVTSSSSASQPSGGDNYNLNFSISSGLAGFNRGTLQSNSPSFLPHLQRFQPLDGSSNLPFFIGAPAPSSAPPTIDSNNNNNHHHLQFSPVFDGRLQLCYGDGTRHSDHKGKGKN 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01555 511 ProSiteProfiles TCP domain profile. 78 136 IPR017887 -
Vian6g01555 511 MobiDBLite consensus disorder prediction 215 255 - -
Vian6g01555 511 MobiDBLite consensus disorder prediction 335 366 - -
Vian6g01555 511 MobiDBLite consensus disorder prediction 22 37 - -
Vian6g01555 511 MobiDBLite consensus disorder prediction 1 66 - -
Vian6g01555 511 MobiDBLite consensus disorder prediction 175 212 - -
Vian6g01555 511 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 43 370 IPR005333 GO:0003700
Vian6g01555 511 MobiDBLite consensus disorder prediction 135 268 - -
Vian6g01555 511 MobiDBLite consensus disorder prediction 335 380 - -
Vian6g01555 511 Pfam TCP family transcription factor 77 233 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01555 Vian-Chr6 33216304 33217839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01555 56 511 TCP Transcription Factor Family AT4G18390 41.841 2.13e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian6g01555 TCP 2.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01555 - - gmx:100787772 701.049