LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian6g01542	ATGGTTTTTGATTTTGATTTTGTTGTTGTGCAGTCGAGGAGAAAGGTCAGAGAGCCAAAAGAGGAAAACGTGACTCTGGGACCAGCTGTTAGAGACGGTGAACACGTCTTTGGTGTCGCTCGTATCTTTGCCTCTTTCAATGACACCTTCATTCATGTCACTGATCTGTCCGGGAGGGAAACCCTTGTCCGCATTACCGGTGGAATGAAGGTTAAAGCCGACAGAGATGAATCATCTCCTTATGCTGCCATGCTTGCAGCACAGGATGTTGCTGCCAGATGCAAGGAACTGGGCATAACTGCTCTTCATATCAGGCTCCGTGCAACTGGCGGAAACAAGACCAAAACACCTGGTCCTGGTGCCCAATCAGCTCTCAGGGCCCTTGCTCGTTCAGGAATGAAAATCGGTCGTATAGAGGACGTGACACCCATTCCTTCGGATAGCACTCGTAGAAAGAGTGGCAGAAGAGGTAGAAGGCTCTAA	483	0.4928	MVFDFDFVVVQSRRKVREPKEENVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIRLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL	160

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian6g01542	160	FunFam	40S ribosomal protein S14	11	160	-	-
	Vian6g01542	160	Pfam	Ribosomal protein S11	38	156	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Vian6g01542	160	MobiDBLite	consensus disorder prediction	140	160	-	-
	Vian6g01542	160	ProSitePatterns	Ribosomal protein S11 signature.	125	147	IPR018102	-
	Vian6g01542	160	Hamap	30S ribosomal protein S11 [rpsK].	13	157	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Vian6g01542	160	PIRSF	RPS11p_RPS11a_RPS14e_RPS11o	9	157	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Vian6g01542	160	PANTHER	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	13	153	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Vian6g01542	160	SUPERFAMILY	Translational machinery components	33	158	-	-
	Vian6g01542	160	Gene3D	Ribosomal protein S11	11	160	IPR036967	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian6g01542	Vian-Chr6	33041909	33043452	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian6g01542	12	149	Cytoplasmic Ribosomal Protein Gene Family	AT3G52580	89.855	6.42e-91	259

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian6g01542	K02955		-	gmx:100306566	266.159