Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01540 ATGGAGCAGTACGGCCGGTCCAGTGAAGGTTCGCGGTCTGATCCGTCCCCGGAATGGGCCGGGCCCGGAGCCCAAACCGGTCTTGAAGAGCCTATGTGGCAATTGGGGCTGGGTGCTGCGGAGGAATCGTATCCGCAACGCCCCGATGAGGCTGATTGCACTTACTACTTGAGGACCGGTTTCTGTGGCTTCGGTTCGCGGTGTCGGTACAATCACCCTCGTGACCGTGGCACGTTTGTTGGAGCTGAGAGGACTGCGGGGGAGTATCCGGAACGAGTTGGCCAACCTGTGTGCCAGTATTACATGAGGACTAGAACGTGCAAGTTTGGTTCGTCTTGCAAGTACCACCACCCGAGGCTAGCAGGAGGATCTGCTACCCCTGTGTCACTAAACTATTATGGATATCCATTGCGTCCGGGTGAAAAGGAGTGCTCATATTATGTGAAAACGGGACAATGCAAGTTTGGTGCGACTTGTAAATTCCATCATCCGGTTCCTGCTGGCGTCCAAATTCCAGCACCATCACCAGTTGCTCCAGTTTCGCCTTTGCCTGTACCAGTGCCTTCACCGTTATATTCAACCATGCAGCCCCCACCTGGTCCTTCATCACAGCAAATTGGTGTGCTGGTTGCAAGGCCTCCTCTGCTGCCTGGCTCATTAGTCCAGAGTCCCTATGGACCTGTGGTACTGTCACCTGCCATGGTACCTATTTCTGGCTGGGGTCCTTATCAAGCTTCTGGAACAGGTGCTGTACTTCCTTCCGGTACTCCTAATGTTGGTTCAGCACAGCTTTATGGGATGACACAACTGCCTTCATCAGCAGCTGCCTATCCTGGACCTTATCAACTACCTGGTTCCTTAGTTGGTCCTTCAAGCAGTAATCAGAAGGAGCAGGCATTTCCAGAAAGGTCTAATCAACCAGATTATCAGTATTATCCGAAAACAGGGGAGGTTAAAGTTGGTCCATCCTATAGGTATCACCCTCCACCAGAAATGACTGCACCAAAAGCAAATGTGACTCTTAGTCCTGGTGGTCTTCCTTTGCGCCCGGGGGCATCACCTTGTACACATTATGCACAACATGGAGTATGTAAGTTTGGTTCTGCATGCAAATTCGATCATTCTATGGGATCACTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACATGCCTGTTGCACCCTATCCTGTGGGTTCAACAATTGGTACTCTTGCTCCATCGTCATCGTCATCAGAGTTGCGGCTGGAACTTTCCTCTGGATCCAACAAAGAGTCTGTTCCATCCAGAATGTCTTCATCGTCCGGAATGTTGACAGGGTCAATAGGCTTGACTTTGTCAACTGGTGAACCCATTTCTCAATCAAATAGTCAGCCATCTGCTCCAAGTCTGGATCCATTAGCCACTGCCACTAGTACCACCACTAGCAATGTCTCTCACACCTCAAGCTAA 1452 0.5076 MEQYGRSSEGSRSDPSPEWAGPGAQTGLEEPMWQLGLGAAEESYPQRPDEADCTYYLRTGFCGFGSRCRYNHPRDRGTFVGAERTAGEYPERVGQPVCQYYMRTRTCKFGSSCKYHHPRLAGGSATPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPVPAGVQIPAPSPVAPVSPLPVPVPSPLYSTMQPPPGPSSQQIGVLVARPPLLPGSLVQSPYGPVVLSPAMVPISGWGPYQASGTGAVLPSGTPNVGSAQLYGMTQLPSSAAAYPGPYQLPGSLVGPSSSNQKEQAFPERSNQPDYQYYPKTGEVKVGPSYRYHPPPEMTAPKANVTLSPGGLPLRPGASPCTHYAQHGVCKFGSACKFDHSMGSLSYSPSASSLADMPVAPYPVGSTIGTLAPSSSSSELRLELSSGSNKESVPSRMSSSSGMLTGSIGLTLSTGEPISQSNSQPSAPSLDPLATATSTTTSNVSHTSS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01540 483 MobiDBLite consensus disorder prediction 286 312 - -
Vian6g01540 483 SUPERFAMILY CCCH zinc finger 140 165 IPR036855 GO:0046872
Vian6g01540 483 Gene3D - 44 124 - -
Vian6g01540 483 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Vian6g01540 483 SUPERFAMILY CCCH zinc finger 352 379 IPR036855 GO:0046872
Vian6g01540 483 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Vian6g01540 483 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Vian6g01540 483 SMART c3hfinal6 349 376 IPR000571 GO:0046872
Vian6g01540 483 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Vian6g01540 483 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Vian6g01540 483 PANTHER PROTEIN PHOSPHATASE RELATED 38 411 - -
Vian6g01540 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872
Vian6g01540 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Vian6g01540 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Vian6g01540 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 376 IPR000571 GO:0046872
Vian6g01540 483 MobiDBLite consensus disorder prediction 1 31 - -
Vian6g01540 483 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Vian6g01540 483 MobiDBLite consensus disorder prediction 405 483 - -
Vian6g01540 483 MobiDBLite consensus disorder prediction 286 311 - -
Vian6g01540 483 Gene3D - 125 171 - -
Vian6g01540 483 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Vian6g01540 483 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Vian6g01540 483 SUPERFAMILY CCCH zinc finger 95 118 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01540 Vian-Chr6 33019819 33030595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01540 1 451 C2H2 Transcription Factor Family AT5G18550 56.034 9.39e-153 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian6g01540 zf-CCCH 9.2e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01540 6 33019819 33030595 Vian6g01540 6 33019819 33030595 ECH
Vian1g00246 1 2138237 2142290 Vian6g01540 6 33019819 33030595 PCT