Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01539 ATGACATATGCAAAATCTCCTTTTCCTTCTCTCATGATGAAGTCACTGTCTTTAAAAGGCTTGGCATTACTTCACCCTTTTCATTCACATTCTCTTGTTTGCTCCCTTGAGGTGACACTATTTAAATTCTCTCCCCCTCCTCAACAAACACATATATTTCTTGCCATTTTCCAAGCCATGTCGACCTCTAGAACCTCAGACGTTTCCCTCAAAGGATATCAGTCTAAACCAACCCAAATGAATTTGTCTCTTCTTCAACGTAACGCATCAACTTCTGGTGAGAGAAGAGGGCGAGGAAAGCAAGCAGAACCTGGAAGGTTTCTTGGGGTGAGAAGACGCCCTTGGGGTAGATATGCTGCTGAAATCAGAAACCCTTTAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCCGAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGATGCCAAGCAAGAACCAACTTCGTATACTCTAAAGATACCAACATTTTCCACAATGCTCTCACTCCTTTCAATTCTCAACCTCTCTTGCCACCTTCACATAACACTCACAACAACATGCAACTAACCAATCAAACTACCCTATCTCACCTTCCTACTTTCACTTCCCACGTTGAAAACCCTTCTTCTGACTTATATGCTGACAGTGAAACTGCTTTTGGGTCACCTCAGGATGATAATTTCTTCTTCTCCACTCAGTCTAACTCTGGCTACCTTGAATGCATAGTTCCCGGTAACTGTTTCAAGAAGAGCAATGCCAGTGCTTCAGGTCGTGACCTAGAGGTTGGCCACGTTAACTCAAACTCCATGCAGATTCAGCCACATTTTGACACCACTCAAGAAGCCTTCAACATGCAAGCAACAGTCGCCCCTGACTATGCAGATTTTTCTTGCCCAACTGATCTTGGTAAAGGATTATGGGATAATCATCAATCATGGGATTGCAGTTCCAATGAACTGGCAGCTATGTTTAAAAATCCATCAAGGGTTGTTGAGGAAGGGTGCATGGATGCGTTGCATCCATTCACTGATAGCTCAAACTATGAGCTAATAACTCAGGTTGTTTCTTCAACTACATATTCTCCATCAGTTCCTCCCTTTGGGAATGTTGGCTCAGCATACTCTCCCTTCTGA 1155 0.4329 MTYAKSPFPSLMMKSLSLKGLALLHPFHSHSLVCSLEVTLFKFSPPPQQTHIFLAIFQAMSTSRTSDVSLKGYQSKPTQMNLSLLQRNASTSGERRGRGKQAEPGRFLGVRRRPWGRYAAEIRNPLTKERHWLGTFDTAEEAALAYDRAALSMKGCQARTNFVYSKDTNIFHNALTPFNSQPLLPPSHNTHNNMQLTNQTTLSHLPTFTSHVENPSSDLYADSETAFGSPQDDNFFFSTQSNSGYLECIVPGNCFKKSNASASGRDLEVGHVNSNSMQIQPHFDTTQEAFNMQATVAPDYADFSCPTDLGKGLWDNHQSWDCSSNELAAMFKNPSRVVEEGCMDALHPFTDSSNYELITQVVSSTTYSPSVPPFGNVGSAYSPF 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01539 384 Gene3D AP2/ERF domain 106 164 IPR036955 GO:0003700|GO:0006355
Vian6g01539 384 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Vian6g01539 384 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 81 256 - -
Vian6g01539 384 FunFam Ethylene-responsive transcription factor 2 106 164 - -
Vian6g01539 384 Pfam AP2 domain 109 155 IPR001471 GO:0003700|GO:0006355
Vian6g01539 384 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Vian6g01539 384 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Vian6g01539 384 CDD AP2 106 162 IPR001471 GO:0003700|GO:0006355
Vian6g01539 384 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Vian6g01539 384 SUPERFAMILY DNA-binding domain 107 164 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01539 Vian-Chr6 33016122 33017276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01539 60 256 AP2-EREBP Transcription Factor Family AT5G18560 47.012 1.69e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian6g01539 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01539 - - vum:124834998 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00245 1 2130842 2131876 Vian6g01539 6 33016122 33017276 PCT