Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01511 ATGGAACCCCAACAATCTCTCCCTCCCATGGACGATTCCGAAGACCCTTCCTCCACTTGGGACTTCTCCTACCTTCTAGACTTCAACCTCGACGAAGACCACACCGATAATTCTCTCCCATTCTCTTCTCTCTTCAACGACGCTCCCGAGATCCCTAACGACCGGGTCCGAAAGCGTGATCCCCGACTCACCTGCTCCAACTTTCTCGCGGGTCGGGTCCCCTGCGCCTGCCCCGAACTTGACGCCAAACTCGAGGATGAGGGTTTGCCTGGCAAGAAACGCGCGCGCACTGCTCGTGCCTCCTCATCCGCTCGATGCCAGGTCCCTGGTTGTGAGGTCGATATCTCCGAACTCAAAGGCTATCACCGCCGACACAGAGTCTGCCTCCTCTGCGCCAATGCCACCACTGTTGTCCTCCACGGCGAGCCCAAGAGATACTGCCAGCAGTGCGGGAAGTTTCATGTTTTGTCGGATTTCGATGAAGGGAAACGAAGTTGCAGAAGGAAGTTAGAACGGCATAACACGCGAAGGCGGAGAAAGCCCCTGGTGGAATCGGGAGGTGGTGCTATCGCCGAACTTGAGGCTGTTACTCAGAATGAGGAAAACAATTATGATGCGGTAGCAGGAAAAGATTGTTCAAATTTGAGTAATGAGATCAACGACATAGTAGTGTTGCCAGATCATGGAGAGGAACCTGTTCCCATTCTGGTATCAGCTCCTGATGCCCAGAATGTTAACAGTGACAGCGTTGTGTCTTTGCCTGTTTCTGGTGAAACTCGAGTGAATAGTGGGAACACTTCTAATTCGCCTTCTTATTGTGACAATAAGAGTGCCTACACGTCTATGTGCCAAACAGGTCGGATTTCGTTTAAGCTTTATGATTGGAATCCAGCAGAATTTCCTAGAAGGCTACGACACCAAATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGTTATATCCGCCCCGGGTGCACCATTTTGACAAGTTTTATTGCAATGCCTAACATTATGTGGATAAATTTACGGAAAGAATCTTTGGAACATGTGAACAAACTTGTTGCCCCGGGAAATATGCTATCTGGAAGAGGGACTGCTCTAGTTCATCTTAATGACATAGTCTTCCGTGTTATGAAAGATGGAACCTCTGTGACGAAAGTCGAGGTTAGCTTGCAGGCACCTAGGCTTCATTATGTTCACCCTACATGCTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAATTCCAGCTTCTTGTATCGTTTTCGGGAAAGTATCTGAAATGTGAGTATTGTGTACCGTCCCCACATAACTGGACTGAAGAAAATATTTCTTGCGCTTTTGACAATCAGTTGTACAAGATATATGTCCCTCATACAGAGGAAAGTCTCTCTGGGCCTGCATTTATTGAGGTGGAGAATGAATCCGGTTTATCAAACTTTATTCCTGTACTAATTGCGGATAAAGAAACTTGTTCTGAAATGAAGATACTGCAGCAAAAATTAGATTCATCTCTCCTTTCTAATCAATTCCGGTCTGCATCAGGTGGTTCTATCTGCAGCTCGTGTGAAACATTTACACTTAGCCACACATCATCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATTACAGCTTCACAAATCCAAAGATATTGTCACTTGTTGGATTTTCTGATGTGCAATGAATCAACAGTCATGTTGGAAAAAATATTACCAAATTTGATAATCTTGACAGCAAGCATGAAATCCAATTTTGTGATTAATACGACTAGTGATGTGGATACAAGGCAACTCCTGAATCACATACATAATGCTCAAATTACCATATTTCAGAAACATCAGAAAAATGGAAGTATTATTGTGCAGCCTGAAATGGAAGGCTTTAGACTTGCTCAGGGTTGCTCTCATGATAACAAGATCTCAGTTGCTATTAACAGTCAGGGTATCCTGTCAAGAGCAGATGCAAAGTGGGGAGTGCTGAAAAATCTAACTTGTAGTGACAAAAATGAAAGAATACCTCTTTTAAAGAGAGATATTATAATGAATGTGGAAGAGTTGCCTGAAATATATGGTCGTGGATGTTTAGGCAGGGGGTTGTTGACCCCTCGACCAGCTATTTTTGTGATGGTTTCGATTGCTGTTTGTCTTGGGGTTTGTGTAGCCGTCCTTCATCCAGGAGGGGTTACTGAGTTAGCAGTATCTGTTAGAAGGTGTTTGTTTAACTATTAG 2295 0.4449 MEPQQSLPPMDDSEDPSSTWDFSYLLDFNLDEDHTDNSLPFSSLFNDAPEIPNDRVRKRDPRLTCSNFLAGRVPCACPELDAKLEDEGLPGKKRARTARASSSARCQVPGCEVDISELKGYHRRHRVCLLCANATTVVLHGEPKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPLVESGGGAIAELEAVTQNEENNYDAVAGKDCSNLSNEINDIVVLPDHGEEPVPILVSAPDAQNVNSDSVVSLPVSGETRVNSGNTSNSPSYCDNKSAYTSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTSFIAMPNIMWINLRKESLEHVNKLVAPGNMLSGRGTALVHLNDIVFRVMKDGTSVTKVEVSLQAPRLHYVHPTCFEAGKPMEFVACGSNLLQPKFQLLVSFSGKYLKCEYCVPSPHNWTEENISCAFDNQLYKIYVPHTEESLSGPAFIEVENESGLSNFIPVLIADKETCSEMKILQQKLDSSLLSNQFRSASGGSICSSCETFTLSHTSSDLLVDIAWLLKDTTSENFDRVITASQIQRYCHLLDFLMCNESTVMLEKILPNLIILTASMKSNFVINTTSDVDTRQLLNHIHNAQITIFQKHQKNGSIIVQPEMEGFRLAQGCSHDNKISVAINSQGILSRADAKWGVLKNLTCSDKNERIPLLKRDIIMNVEELPEIYGRGCLGRGLLTPRPAIFVMVSIAVCLGVCVAVLHPGGVTELAVSVRRCLFNY 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01511 764 Gene3D - 97 167 IPR036893 GO:0003677|GO:0005634
Vian6g01511 764 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 69 581 IPR044817 GO:0003677
Vian6g01511 764 SUPERFAMILY SBT domain 104 181 IPR036893 GO:0003677|GO:0005634
Vian6g01511 764 Pfam SBP domain 106 180 IPR004333 GO:0003677
Vian6g01511 764 ProSiteProfiles Zinc finger SBP-type profile. 103 180 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01511 Vian-Chr6 32690078 32698737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01511 8 758 SBP-box Gene Family AT5G18830 45.342 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vian6g01511 SBP 8.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01511 - - gmx:100776034 1253.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01511 6 32690078 32698737 Vian6g01511 6 32690078 32698737 ECH