Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01505 ATGAACGATGAACGAGAACCAACAGCTTCCTCGAGAGAATTTTATGTTGGCAGCAATGGCGTCCCAAAGACAGAAAGAAAACAAGTAGTTGAAAGGGATAAATCTATTTTTAGAGGCAGGCGTCCACGAACTGGGTTTTCTGATTCATTCTCAAGTATTGAATTGGAAGCATTAGACAATGAAGAGGGAGGAGCACCTGAGCACTCTCCTAGGAGTCAAGGGTCTGAAACCCCAAGTTCAAGGACCAGCACTTCAGATTCGGAGGGTCAGGGGTCTTTAGTAGGCAATTCACCTAATGCTAATAATCAATGGCGTGGTTTCTTCAAGTTACTGAAGAAAGGATCCCAAATGCCTTTCCAAACTTTTCATCCACTTAAAAATGTTCCAAAACTCACAAGAAGAAAAAGCAAGAGAATCAGGGAGGACATGTGTCCATCTTTGAATTCTCCAGCTCTTCGCTCATCTTTTGACAGTGAGTTTGGCTACTTAAAATCTTCATGGAAAAACTTCACTCTCGCAGAGATCTTGACTGCAACAAACGACTTTAGCGAAGCTAATTTGATTGGGGAGGGAGGCTATGCGGAGGTTTATTTAGGAAAATTGGAAGATGGAAACTTTGTTGCCATTAAACGGTTGACAAGAGGGAACCAAGAAGAAATGACCGCAGATTTCTTGTCTGAGCTTGGCATTATAGTACATGTGGATCATCCCAATATAGCTAGATTGATCGGATATGGTGTTGAAGGAGGAATGTTTCTTGTTCTTCAATTGTCTCCACATGGTAGCTTGTCATCTATACTTTATGGACCTAGAGAGAAGCTGAATTGGAGCCTCAGATATAAGATTATTCTGGGGACTGCTGAGGGACTCCGCTATCTGCATGAGGGTTGTCAAAGAAGGATCATTCACAAAGACATTAAGGCTTCTAATATTTTGCTCTCAGAGGATTTTGAGCCACAGATATCTGATTTTGGGCTTGCAAAGTGGTTACCTGACCAATGGACTCATCATACTGTCTCCAAAGTGGAAGGCACATTCGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACAGATGTGTATGCTTATGGTGTGCTATTATTGGAGCTCATTACTGGTCGACAAGCTTTGGATAGCTCACAGAGAAGTCTGGTGATGTGGGCAAAACCTCTGCTATCTGCAAATAATATCAAAGCCCTAGTAGATCCAGTTTTGGCTGATGCTTACAATGAAGAGCAGATGGAACTTGTAACCTTAACAGCTTCTCTATGTGTGTTGGAGATACTAAGAGGGGAAGAAGATATCCTGAGAATCATGAAAGAACGGACCAAGGTAAAACTTCAGAGGACATACTCTGAAGAACTGTTTGATGCAGAAGAGTACAACTCAACCAAGTTTTTGAATGAGAGGGATCGACATATGGAGACTATTCTAGGCTCAGTTACAGATGAATGA 1470 0.4177 MNDEREPTASSREFYVGSNGVPKTERKQVVERDKSIFRGRRPRTGFSDSFSSIELEALDNEEGGAPEHSPRSQGSETPSSRTSTSDSEGQGSLVGNSPNANNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDMCPSLNSPALRSSFDSEFGYLKSSWKNFTLAEILTATNDFSEANLIGEGGYAEVYLGKLEDGNFVAIKRLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRYKIILGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQRSLVMWAKPLLSANNIKALVDPVLADAYNEEQMELVTLTASLCVLEILRGEEDILRIMKERTKVKLQRTYSEELFDAEEYNSTKFLNERDRHMETILGSVTDE 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01505 489 PANTHER OS08G0249100 PROTEIN 58 468 IPR046958 -
Vian6g01505 489 Gene3D Phosphorylase Kinase; domain 1 155 256 - -
Vian6g01505 489 Gene3D Transferase(Phosphotransferase) domain 1 259 457 - -
Vian6g01505 489 MobiDBLite consensus disorder prediction 25 41 - -
Vian6g01505 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
Vian6g01505 489 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 259 455 - -
Vian6g01505 489 Pfam Protein kinase domain 183 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01505 489 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 152 256 - -
Vian6g01505 489 ProSiteProfiles Protein kinase domain profile. 182 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01505 489 ProSitePatterns Protein kinases ATP-binding region signature. 188 210 IPR017441 GO:0005524
Vian6g01505 489 SMART serkin_6 182 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g01505 489 MobiDBLite consensus disorder prediction 1 100 - -
Vian6g01505 489 SUPERFAMILY Protein kinase-like (PK-like) 167 388 IPR011009 -
Vian6g01505 489 MobiDBLite consensus disorder prediction 70 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01505 Vian-Chr6 32643566 32646474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01505 153 429 Receptor kinase-like Gene Family AT1G53420 41.053 8.69e-65 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vian6g01505 Pkinase 9.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01505 - - gmx:102670300 817.379