Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01496 ATGGGGTGTGTCCATGGCAAGTGCTGTACCCGTTACCCTTCACCGTCAGTGGGTGGCTCCAGGGACTTCAGAGAACTTGGCCCTTATGGTACCCAGAGGAAGCACATTCTCACTCAGAGTTCACTGCAGTTTGTTCCCGTTCCTTCCCATAACTTCACTTTAGAATACTCTGTGCTCACTCAGAGAGGGTACTATCCTGATTCACCTGATAAGGAAAACCAGGATAGTTTCTGCATTAGGACACAGTTCCAAGGTAACCCAAGTGTCCATTTCTTCGGTGTTTATGATGGGCATGGCGAATTTGGTGCCCAGTGTTCGAACTTTGTTAAGGATAGGTTGGTGGAAAATTTGTCAAGTGACTTTGCATTGTTGGAGGACCCTGTCAAGGCTTACACTTCTGCTTTCTTGACCACGAACGAGGACTTGCATAAGAATGAGATTGACGATTCCTTGAGTGGCACCACTGCAATTACGGTGCTGGTCATTGGGGACACCCTTTATGTTGCTAATGTCGGTGATTCGAGAGCAGTGCTGGCTGTTAAGGATGGGAACCGGGTTGTTGCTGAGGACTTGTCCACTGATCAGACACCATTTAGGAGAGATGAGTATGAGAGAGTGAAGCTTTGTGGGGCAAGGGTTTTGAGTGTTGATCAGGTGGAAGGGCATAAGGATCCGGATATTCAGACTTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCTAGGTTGTGGGTTCAGAATGGGACGGTGCCTGGAGCTGCATTTACAAGGAGTGTAGGGGATATGTTGGCTGAGACTATCGGTGTAATTGCTGTTCCTGAGGTGTCAACGGTTCAGCTTACACCTAACCATCTTTTCTTTGTTGTTGCAAGTGATGGGGTATTTGAGTTCCTATCCAGCCAAACTGTTGTTGATATGGCAGCAAGTTATTCAGATCCCCGTGATGCATGTGCTGCCATTGCTGGAGAGTCATATAAACTATGGTTAGAACACGATGGCCGAACTGATGATATAACAATTATTATCGTTCAGATCAAAGGCCTGTCTAATTCAGGTACATCTGGACTTGGATCAGGAGAGGTCAATGTCAGCACTGTAACAAGGACCAAGAGCAAGAGGGTAAAGGGAGCATCTGAATTATCTGCCACAACTGGGTTAGATGTTTATCGTTCGGTCAGGAATGGCTTCTCTGATTTACAGTCCTGTCCACAGCATGTGGTCTCAACTAAAAGCCCAGCCATAGTGGTCCCTTCTCCAGCTTGTCCAACATCTGTTACATAG 1281 0.4699 MGCVHGKCCTRYPSPSVGGSRDFRELGPYGTQRKHILTQSSLQFVPVPSHNFTLEYSVLTQRGYYPDSPDKENQDSFCIRTQFQGNPSVHFFGVYDGHGEFGAQCSNFVKDRLVENLSSDFALLEDPVKAYTSAFLTTNEDLHKNEIDDSLSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRVVAEDLSTDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQNGTVPGAAFTRSVGDMLAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHDGRTDDITIIIVQIKGLSNSGTSGLGSGEVNVSTVTRTKSKRVKGASELSATTGLDVYRSVRNGFSDLQSCPQHVVSTKSPAIVVPSPACPTSVT 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01496 426 SUPERFAMILY PP2C-like 44 347 IPR036457 -
Vian6g01496 426 CDD PP2Cc 71 345 IPR001932 -
Vian6g01496 426 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Vian6g01496 426 SMART PP2C_4 51 343 IPR001932 -
Vian6g01496 426 PANTHER PROTEIN PHOSPHATASE 73 344 IPR015655 GO:0004722|GO:0006470
Vian6g01496 426 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Vian6g01496 426 Gene3D - 47 347 IPR036457 -
Vian6g01496 426 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Vian6g01496 426 MobiDBLite consensus disorder prediction 223 239 - -
Vian6g01496 426 MobiDBLite consensus disorder prediction 223 242 - -
Vian6g01496 426 Pfam Protein phosphatase 2C 73 320 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01496 Vian-Chr6 32584989 32587698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01496 1 350 PP2C-type Phosphatase Gene Family AT3G06270 72.000 0.0 513